RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ACTA2P62736 377 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 GNG3P63215 75 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 ACTG2P63267 376 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 ACTC1P68032 377 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 ACTA1P68133 377 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 COQ5Q5HYK3 327 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 CEP78Q5JTW2 689 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 MINOS1Q5TGZ0 78 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 METTL21CQ5VZV1 264 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 C18orf65Q6ZTR6 163 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 PRSS45Q7RTY3 260 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 OR2W3Q7Z3T1 314 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.82□□□□□ -1.48
VPS4A-203ENST00000564399 ASCC1Q8N9N2 400 aaKnown RBP5.82□□□□□ -1.48
VPS4A-203ENST00000564399 OR52L1Q8NGH7 329 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 OR6K6Q8NGW6 343 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 FAM81AQ8TBF8 368 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 STON2Q8WXE9 905 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 AQP3Q92482 292 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 FAM162AQ96A26 154 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF488Q96MN9 340 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 DUX3Q96PT4 197 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 MYLK2Q9H1R3 596 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 OR51I2Q9H344 312 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 TBC1D23Q9NUY8 699 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 CMTM6Q9NX76 183 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 VNN3Q9NY84 501 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 NDUFAF4Q9P032 175 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 MINOS1-NBL1R4GNA1 71 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 TNCP24821 2201 aa5.82□□□□□ -1.48
VPS4A-203ENST00000564399 OR2F2O95006 317 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 NXPH2O95156 264 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 RBP4P02753 201 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 TK1P04183 234 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 GYPBP06028 91 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 H2BFMP0C1H6 154 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 HTR1DP28221 377 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 SLC6A1P30531 599 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 OR3A4PP47883 348 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 ARHGDIBP52566 201 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 SMIM11AP58511 58 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 LIPEQ05469 1076 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 MAPRE2Q15555 327 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 TEX30Q5JUR7 227 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 C9orf66Q5T8R8 295 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 PLBD1Q6P4A8 553 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 ADAMTSL5Q6ZMM2 481 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 MOB3CQ70IA8 216 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 GDPD3Q7L5L3 318 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 BATF2Q8N1L9 274 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF676Q8N7Q3 588 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 OR6N2Q8NGY6 317 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 OR8B4Q96RC9 309 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 CDRT15Q96T59 188 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 P2RX4Q99571 388 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 ABHD6Q9BV23 337 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 ZFP57Q9NU63 452 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 CD300AQ9UGN4 299 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 AP3M1Q9Y2T2 418 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 SMAD5-AS1Q9Y6J3 95 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 SACSQ9NZJ4 4579 aa5.81□□□□□ -1.48
VPS4A-203ENST00000564399 IGHV2-26A0A0B4J1V2 119 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 OR5B21A6NL26 309 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SEC14L6B5MCN3 397 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 M0QZK8 103 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 CCL24O00175 119 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 DNAJC8O75937 253 aaPredicted RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 GADD45GO95257 159 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SNRNP70P08621 437 aaKnown RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 NCK1P16333 377 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SPI1P17947 270 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 IFNGR2P38484 337 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 MAP2K3P46734 347 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 NUDT2P50583 147 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 BLVRAP53004 296 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 KLF10Q13118 480 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SNAPC1Q16533 368 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 CEACAM21Q3KPI0 293 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 PLCXD3Q63HM9 321 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ARPINQ7Z6K5 226 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ERI1Q8IV48 349 aaKnown RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SBSPONQ8IVN8 264 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF695Q8IW36 515 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SLC15A3Q8IY34 581 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 POC1AQ8NBT0 407 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 SLC37A3Q8NCC5 494 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 OR5A2Q8NGI9 324 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 OR5M8Q8NGP6 311 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 GNPDA2Q8TDQ7 276 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 CHPT1Q8WUD6 406 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 RNF133Q8WVZ7 376 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 RAX2Q96IS3 184 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 NOL4LQ96MY1 436 aaPredicted RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ZNF714Q96N38 554 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 RBM14Q96PK6 669 aaKnown RBP5.8□□□□□ -1.48
VPS4A-203ENST00000564399 INTS14Q96SY0 518 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 FUZQ9BT04 418 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 CLEC7AQ9BXN2 247 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 EGLN3Q9H6Z9 239 aa5.8□□□□□ -1.48
VPS4A-203ENST00000564399 ZMAT4Q9H898 229 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms