RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FAM230AA0A1W2PPH8 454 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 PQLC2LA1A4F0 135 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 A6NIN4 97 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OR5H1A6NKK0 313 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 IQCF6A8MYZ5 107 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 BOLA2-SMG1P6H3BVE0 249 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 J3QT63 122 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RGS13O14921 159 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ARPC1BO15143 372 aaKnown RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 SSX4O60224 188 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RLN1P04808 185 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 EDN3P14138 238 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF14P17017 642 aaPredicted RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 SERPINA2P20848 420 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FUT3P21217 361 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 CCNOP22674 350 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FPR2P25090 351 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 GLP1RP43220 463 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 KCNJ3P48549 501 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 GZMKP49863 264 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RBM11P57052 281 aaKnown RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 TSPAN5P62079 268 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 CXADRP78310 365 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 SRPXP78539 464 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 NHLH1Q02575 133 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 PRDX4Q13162 271 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 CBX3Q13185 183 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RSPO4Q2I0M5 234 aaPredicted RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 LINC00303Q3SY05 128 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 C4orf46Q504U0 113 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 SPIN3Q5JUX0 258 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FAM209AQ5JX71 171 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RNFT1Q5M7Z0 435 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OTPQ5XKR4 325 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 MOB3CQ70IA8 216 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 MRGPRGQ86SM5 289 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FAM185AQ8N0U4 392 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF611Q8N823 705 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 CPEB3Q8NE35 698 aaKnown RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 BEST4Q8NFU0 473 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OR5AP2Q8NGF4 316 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OR56B2PQ8NGI1 322 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OR51S1Q8NGJ8 323 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 OR8S1Q8NH09 359 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 TERB2Q8NHR7 220 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 COQ8AQ8NI60 647 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 PIGCQ92535 297 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 EMG1Q92979 244 aaKnown RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF486Q96H40 463 aaPredicted RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 SYT3Q9BQG1 590 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 TMPRSS13Q9BYE2 586 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 C12orf49Q9H741 205 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF286AQ9HBT8 521 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 NGBQ9NPG2 151 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 GPR173Q9NS66 373 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 NECAP2Q9NVZ3 263 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF69Q9UC07 566 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF629Q9UEG4 869 aaPredicted RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 GPR160Q9UJ42 338 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 ZNF222Q9UK12 451 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FBXO9Q9UK97 447 aaPredicted RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 C14orf166Q9Y224 244 aaKnown RBP6.5□□□□□ -1.37
VPS39-204ENST00000561818 MEMO1Q9Y316 297 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 FRYLO94915 3013 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 NCOA6Q14686 2063 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 LOC100509620A0A075B734 347 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 A0A087WV48 116 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 A0A096LPE4 126 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 A0A1B0GW55 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 A0A1W2PPZ6 126 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 FOXI3A8MTJ6 420 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 H3BSH0 61 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SMPD2O60906 423 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 HTR3BO95264 441 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUS4LO95620 317 aaKnown RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 IGLV1-44P01699 117 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 IGHV3-9P01782 118 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L2P0CJ85 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L3P0CJ86 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L4P0CJ87 422 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L5P0CJ88 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L6P0CJ89 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 DUX4L7P0CJ90 424 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 HLA-GP17693 338 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 IGHV1-2P23083 117 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ACKR3P25106 362 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 GCH1P30793 250 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 KIR2DL2P43627 348 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 CCR6P51684 374 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 PPP1CBP62140 327 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 CD83Q01151 205 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 FOXC1Q12948 553 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ZNF718Q3SXZ3 478 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 ESCO2Q56NI9 601 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 TMEM128Q5BJH2 165 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 RNASE12Q5GAN4 147 aaKnown RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 SHEQ5VZ18 495 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SFRP4Q6FHJ7 346 aaPredicted RBP6.49□□□□□ -1.37
VPS39-204ENST00000561818 ZNF585AQ6P3V2 769 aa6.49□□□□□ -1.37
VPS39-204ENST00000561818 SEZ6L2Q6UXD5 910 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms