RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KCNJ3P48549 501 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 INPP1P49441 399 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 GZMMP51124 257 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 RAB5CP51148 216 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 XKP51811 444 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 POLR2JP52435 117 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 NUTF2P61970 127 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 UBA52P62987 128 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ERVK-25P63136 954 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ACTA1P68133 377 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SLC7A9P82251 487 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ST3GAL4Q11206 333 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TCP10Q12799 353 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 MLLT11Q13015 90 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PDZK1IP1Q13113 114 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 GPR176Q14439 515 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 MXD4Q14582 209 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SMCO1Q147U7 214 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SSX1Q16384 188 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 DPYSL2Q16555 572 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TTLL9Q3SXZ7 439 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 LINC00483Q53H64 154 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 XKR7Q5GH72 579 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PAGE3Q5JUK9 113 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 MARCH8Q5T0T0 291 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR2T5Q6IEZ7 315 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR52W1Q6IF63 320 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CD200R1LQ6Q8B3 271 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 FAM159AQ6UWV7 190 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TPGS1Q6ZTW0 290 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM179Q6ZVK1 233 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 AHSA2Q719I0 299 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SLC16A13Q7RTY0 426 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 MRPL52Q86TS9 123 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 C17orf82Q86X59 251 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CALHM3Q86XJ0 350 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 FTMTQ8N4E7 242 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ARRDC1Q8N5I2 433 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF615Q8N8J6 731 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF740Q8NDX6 193 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PROKR2Q8NFJ6 384 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PXT1Q8NFP0 134 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR56A4Q8NGH8 313 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR9Q1Q8NGQ5 310 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR9I1Q8NGQ6 314 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR6K3Q8NGY3 331 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR2T29Q8NH02 315 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR56B4Q8NH76 319 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 AKR7LQ8NHP1 331 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 JOSD2Q8TAC2 188 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 RHEBL1Q8TAI7 183 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 AGR3Q8TD06 166 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 HTR3CQ8WXA8 447 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PIGCQ92535 297 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OSTF1Q92882 214 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 MALSU1Q96EH3 234 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 DYNLL2Q96FJ2 89 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CELF6Q96J87 481 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PPP1R36Q96LQ0 422 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CCNL2Q96S94 520 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 PFDN5Q99471 154 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 VAT1Q99536 393 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 GPA33Q99795 319 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 WRAP53Q9BUR4 548 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TMED9Q9BVK6 235 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ERVK-6Q9BXR3 956 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SIRPDQ9H106 197 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 OR51V1Q9H2C8 321 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SLC38A1Q9H2H9 487 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 XKR8Q9H6D3 395 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 RNF167Q9H6Y7 350 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM138Q9NPI0 162 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 HEBP1Q9NRV9 189 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 RASL12Q9NYN1 266 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CRCT1Q9UGL9 99 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TRMT112Q9UI30 125 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 CYTH4Q9UIA0 394 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF222Q9UK12 451 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 SAMD4AQ9UPU9 718 aaKnown RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 POLR3HQ9Y535 204 aaPredicted RBP2.17□□□□□ -2.06
VPS13C-208ENST00000559119 HES2Q9Y543 173 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 DNAJC15Q9Y5T4 150 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 TAF1LQ8IZX4 1826 aa2.17□□□□□ -2.06
VPS13C-208ENST00000559119 NHSQ6T4R5 1651 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TRAV19A0A0A6YYK7 116 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 A0A1B0GV90 55 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TRDV1A0A1B0GX56 115 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ARRDC5A6NEK1 342 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NAP1L6A6NFF2 107 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ANKRD30BLA7E2S9 258 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 COLCA2A8K830 154 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SNRPGP15A8MWD9 76 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF879B4DU55 563 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 WASH3PC4AMC7 463 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 F8WDY8 70 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GFYI3L273 518 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NDUFS8O00217 210 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 UBFD1O14562 309 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TCAPO15273 167 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TOX3O15405 576 aaPredicted RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms