RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CHRM2P08172 466 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 GUSBP08236 651 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 MELTFP08582 738 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 DAP3P51398 398 aaKnown RBP9.98□□□□□ -0.81
LDLR-208ENST00000558518 SLC35A1P78382 337 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 RHEBQ15382 184 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 AADACL3Q5VUY0 350 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 TMEM156Q8N614 296 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 MRPL38Q96DV4 380 aaKnown RBP9.98□□□□□ -0.81
LDLR-208ENST00000558518 WFDC1Q9HC57 220 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 FAM206AQ9NX38 181 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 GFOD1Q9NXC2 390 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 HSF4Q9ULV5 492 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 PIGLQ9Y2B2 252 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 PRR19A6NJB7 356 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 MT-ATP6P00846 226 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 FSTP19883 344 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 SNCAP37840 140 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 MTCP1P56278 107 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 GAMTQ14353 236 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 SURF2Q15527 256 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 PCK2Q16822 640 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 OR2T2Q6IF00 324 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 UEVLDQ8IX04 471 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 CCDC54Q8NEL0 328 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 MCTS1Q9ULC4 181 aaKnown RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 DOCK11Q5JSL3 2073 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 OR5H15A6NDH6 313 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 DBX1A6NMT0 343 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 SSSCA1O60232 199 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 HLA-HP01893 362 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 HEXBP07686 556 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 PATE4P0C8F1 98 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 AFF3P51826 1226 aaKnown RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 VAMP2P63027 116 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 GNMTQ14749 295 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 TMEM176BQ3YBM2 270 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 AKR1C8PQ5T2L2 129 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 FAHD2BQ6P2I3 314 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 OR10S1Q8NGN2 331 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 HAS2Q92819 552 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 HOXB13Q92826 284 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 KLHDC7BQ96G42 594 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 FAHD2AQ96GK7 314 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 SLC35B3Q9H1N7 401 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 SMOC1Q9H4F8 434 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 METTL7AQ9H8H3 244 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 MYOZ1Q9NP98 299 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 PARP11Q9NR21 331 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 PIAS3Q9Y6X2 628 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 KIR2DS5A0A0G2JLQ3 304 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 A0A0G2JNG1 304 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 NUDT19A8MXV4 375 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 KIR2DS3K7RE56 304 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 PPP1R2P9O14990 202 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 ZNF728P0DKX0 622 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 ZNF43P17038 809 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 MNX1P50219 401 aaPredicted RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 TAS2R46P59540 309 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 RAB11AP62491 216 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 KIR2DS5Q14953 304 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 OPN5Q6U736 354 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 EMG1Q92979 244 aaKnown RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 THOC3Q96J01 351 aaKnown RBP9.97□□□□□ -0.81
LDLR-208ENST00000558518 PLEK2Q9NYT0 353 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 AK3Q9UIJ7 227 aa9.97□□□□□ -0.81
LDLR-208ENST00000558518 HMGB3O15347 200 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 MMP9P14780 707 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 HLA-GP17693 338 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 FBLP22087 321 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 CCNOP22674 350 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 GNRHRP30968 328 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 FNDC7Q5VTL7 733 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 NSUN5P2Q63ZY6 315 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 FDX2Q6P4F2 183 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 UNQ6494/PRO21346Q6UXR6 183 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 MYPOPQ86VE0 399 aaPredicted RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 RNF133Q8WVZ7 376 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 ASB10Q8WXI3 467 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 TMEM234Q8WY98 164 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 SNX22Q96L94 193 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 METTL1Q9UBP6 276 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 A0A1B0GTQ1 180 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 PMS2P1A4D2B8 440 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 TMEM14DPA8MWL7 114 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 GEMIN2O14893 280 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 DXOO77932 396 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 G0S2P27469 103 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 VEGFBP49765 207 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 CLDN17P56750 224 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 RPS23P62266 143 aaKnown RBP9.96□□□□□ -0.81
LDLR-208ENST00000558518 HGFACQ04756 655 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 NKAIN1Q4KMZ8 207 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 GPR157Q5UAW9 335 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 SLC22A25Q6T423 547 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 OR5AS1Q8N127 324 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 RAB39BQ96DA2 213 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 PECRQ9BY49 303 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 SERINC1Q9NRX5 453 aa9.96□□□□□ -0.81
LDLR-208ENST00000558518 PPP4R1LQ9P1A2 415 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms