RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	RHBDL1	O75783	438 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	LINC00032	P0C843	101 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ETS2	P15036	469 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ZNF182	P17025	639 aa	Predicted RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	PAX6	P26367	422 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	SERPINB9	P50453	376 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ERF	P50548	548 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ZNF133	P52736	654 aa	Predicted RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	OR12D2	P58182	307 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	MZT1	Q08AG7	82 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	RBM39	Q14498	530 aa	Known RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	MELK	Q14680	651 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ANXA8L1	Q5VT79	327 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	HHAT	Q5VTY9	493 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	PRAMEF6	Q5VXH4	476 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	FAM91A1	Q658Y4	838 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	HCP5	Q6MZN7	132 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	C10orf99	Q6UWK7	81 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	KCTD8	Q6ZWB6	473 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	DHDDS	Q86SQ9	333 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	NFE4	Q86UQ8	179 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	LCA5	Q86VQ0	697 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	TMEM139	Q8IV31	216 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	LRRC34	Q8IZ02	419 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	LSMEM1	Q8N8F7	131 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	BHLHE23	Q8NDY6	225 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	AEN	Q8WTP8	325 aa	Known RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ACOT11	Q8WXI4	607 aa	Predicted RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	ST6GALNAC6	Q969X2	333 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	NABP1	Q96AH0	204 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	DUS3L	Q96G46	650 aa	Known RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	PPP3R2	Q96LZ3	170 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	HARBI1	Q96MB7	349 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	RBP7	Q96R05	134 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	CDRT15	Q96T59	188 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	MRPL13	Q9BYD1	178 aa	Known RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	GRPEL1	Q9HAV7	217 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	SEBOX	Q9HB31	216 aa	Predicted RBP	4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	C1orf123	Q9NWV4	160 aa		4.53	□□□□□ -1.68
ATXN3-223	ENST00000553686	NUP214	P35658	2090 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	PRSS51	A0A1B0GVH4	220 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686		A0A1B0GWA3	101 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	hCG_1807616	A0A1W2PRN6	198 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	POLR3G	O15318	223 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	DEDD	O75618	318 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	CPSF4	O95639	269 aa	Known RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	PGA5	P0DJD9	388 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	GP9	P14770	177 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	LAP3	P28838	519 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	PHB	P35232	272 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TGM4	P49221	684 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	CRISP3	P54108	245 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	SLC35B1	P78383	322 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	HOXC5	Q00444	222 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	SCRN3	Q0VDG4	424 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	KIR2DS1	Q14954	304 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	OR8G1	Q15617	311 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	SSX2	Q16385	188 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	MRGPRG-AS1	Q2M3A8	158 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	ABCA11P	Q4W5N1	156 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	WDR38	Q5JTN6	314 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	LGALS9C	Q6DKI2	356 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	ANKRD46	Q86W74	232 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	SGPP2	Q8IWX5	399 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	RIMKLA	Q8IXN7	391 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	CLECL1	Q8IZS7	167 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	KRTCAP2	Q8N6L1	136 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TRIML2	Q8N7C3	387 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	NOXO1	Q8NFA2	376 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	OR2T11	Q8NH01	316 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	OR4Q3	Q8NH05	313 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	FNDC8	Q8TC99	324 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	CHPT1	Q8WUD6	406 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	APOBEC3D	Q96AK3	386 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	C12orf43	Q96C57	262 aa	Known RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TMEM68	Q96MH6	324 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	DUX3	Q96PT4	197 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	SEPHS2	Q99611	448 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	PITX2	Q99697	317 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	NAPG	Q99747	312 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	DCLRE1B	Q9H816	532 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TMEM27	Q9HBJ8	222 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TAS2R5	Q9NYW4	299 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	PTTG3P	Q9NZH4	202 aa		4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	ZNF443	Q9Y2A4	671 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	KLK5	Q9Y337	293 aa	Predicted RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	TBL2	Q9Y4P3	447 aa	Known RBP	4.52	□□□□□ -1.69
ATXN3-223	ENST00000553686	NUPR2	A6NF83	97 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	TRIM64C	A6NLI5	447 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686		M0QZK8	103 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	AZIN1	O14977	448 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	SGCE	O43556	437 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	DOK2	O60496	412 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	FMO6P	O60774	539 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	PEX11A	O75192	247 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	TRMU	O75648	421 aa	Known RBP	4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	SLC2A10	O95528	541 aa		4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	PTBP3	O95758	552 aa	Known RBP	4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	VIM	P08670	466 aa	Known RBP	4.51	□□□□□ -1.69
ATXN3-223	ENST00000553686	SNRPA	P09012	282 aa	Known RBP	4.51	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms