RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 MAB21L2Q9Y586 359 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 CENPVL3A0A0U1RRI6 287 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 DAPL1A0PJW8 107 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 TMEM89A2RUT3 159 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 ANKRD61A6NGH8 418 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 H3BSH0 61 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 J3QT63 122 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 MPZL2O60487 215 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 TOX4O94842 621 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 PGA5P0DJD9 388 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 DBTP11182 482 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 MPZP25189 248 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 HAAOP46952 286 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 COMPP49747 757 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 BPIFB3P59826 476 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 NANOS3P60323 173 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 RBMS3Q6XE24 437 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 BRD3OSQ6XYD6 125 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 ACP7Q6ZNF0 438 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 CALHM1Q8IU99 346 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 ACBD7Q8N6N7 88 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 CD177Q8N6Q3 437 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 C8orf46Q8TAG6 207 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 TMIGD2Q96BF3 282 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 SDSLQ96GA7 329 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 MED30Q96HR3 178 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 DMRTB1Q96MA1 342 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF488Q96MN9 340 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 NRIP2Q9BQI9 281 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 AMBNQ9NP70 447 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 MRPS18AQ9NVS2 196 aaKnown RBP8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 RASL12Q9NYN1 266 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 FRRS1LQ9P0K9 344 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 MYRFQ9Y2G1 1151 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 PCDHGB1Q9Y5G3 927 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 TENM1Q9UKZ4 2725 aa8.47□□□□□ -1.05
CCDC88C-206ENST00000553437 IGKV1-27A0A075B6S5 117 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 MDFIC2A0A1B0GVS7 189 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 LOC107986453A0A1B0GWG9 222 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 DNAJC9-AS1A6NH13 148 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 NKX6-3A6NJ46 265 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 SNTNA6NMZ2 147 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 CLDN34H7C241 214 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 WBP4O75554 376 aaKnown RBP8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 IGHA1P01876 353 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 ISG15P05161 165 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 UBCP0CG48 685 aaKnown RBP8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 PRTN3P24158 256 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 GABRA2P47869 451 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 CCR9P51686 369 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 CAV3P56539 151 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 ERVK11-1P61568 191 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 IL13RA1P78552 427 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 BAMBIQ13145 260 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 GALEQ14376 348 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC9A3R2Q15599 337 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 DEFB112Q30KQ8 113 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 LRRC10Q5BKY1 277 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 GPR157Q5UAW9 335 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 METTL11BQ5VVY1 283 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 RUSC1-AS1Q66K80 236 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 FAM220AQ7Z4H9 259 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 ANGPTL5Q86XS5 388 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 Q8N7P7 452 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNRF1Q8ND25 227 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 C10orf35Q96D05 121 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 ADAT3Q96EY9 351 aaPredicted RBP8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 PELI1Q96FA3 418 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 C4orf36Q96KX1 117 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 Q96MT0 163 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 RDH12Q96NR8 316 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 DUX5Q96PT3 197 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 PKIBQ9C010 78 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 CHST5Q9GZS9 411 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 HES4Q9HCC6 221 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 SMPD3Q9NY59 655 aaPredicted RBP8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC25A10Q9UBX3 287 aaPredicted RBP8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 KPTNQ9Y664 436 aa8.46□□□□□ -1.06
CCDC88C-206ENST00000553437 IGKV1-9A0A0C4DH69 117 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 FAM230AA0A1W2PPH8 454 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 RFPL4AA6NLU0 287 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 OR4C45A6NMZ5 311 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 RFPL4AL1F8VTS6 287 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 F8VVB4 439 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 F8VWA3 439 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 J3QLW9 94 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF19P17023 458 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 RAB40BQ12829 278 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 IL24Q13007 206 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 PDCD1Q15116 288 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM244Q5VVB8 128 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 VMO1Q7Z5L0 202 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 LHFPL3Q86UP9 236 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 EGFL6Q8IUX8 553 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 SYS1Q8N2H4 156 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 KIR3DL3Q8N743 410 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 OR52I1Q8NGK6 324 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 OR10AC1Q8NH08 325 aa8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 TRMT10AQ8TBZ6 339 aaKnown RBP8.45□□□□□ -1.06
CCDC88C-206ENST00000553437 NPRL2Q8WTW4 380 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms