RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IFITM2Q01629 132 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 SCGB2B2Q4G0G5 96 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 VAX1Q5SQQ9 334 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 CD163Q86VB7 1156 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 C1orf162Q8NEQ5 155 aaPredicted RBP22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 POM121Q96HA1 1249 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 POFUT1Q9H488 388 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 HSF4Q9ULV5 492 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 PQLC2LA1A4F0 135 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 CRYABP02511 175 aaKnown RBP22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 COX5AP20674 150 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 HLXQ14774 488 aaPredicted RBP22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 NKPD1Q17RQ9 610 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 INO80CQ6PI98 192 aaPredicted RBP22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 HOGA1Q86XE5 327 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 ZDHHC23Q8IYP9 409 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 ZDHHC22Q8N966 263 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 FBXW5Q969U6 566 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 DLL4Q9NR61 685 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 PLSCR4Q9NRQ2 329 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 MYO7BQ6PIF6 2116 aa22.69■■□□□ 1.22
CCDC88C-205ENST00000553403 IGKV1-12A0A0C4DH73 117 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 CD300LBA8K4G0 201 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 PLATP00750 562 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 IGKV1D-12P01611 117 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 IFNA6P05013 189 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 GABRR1P24046 479 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 MRPL49Q13405 166 aaKnown RBP22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 CEACAM21Q3KPI0 293 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 ZNF585AQ6P3V2 769 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 MGAT4CQ9UBM8 478 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 DKK4Q9UBT3 224 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 MKRN2OSH3BPM6 223 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 CSN2P05814 226 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 ATPAF1Q5TC12 328 aaPredicted RBP22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 VWA1Q6PCB0 445 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 SAXO1Q8IYX7 474 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 OSR2Q8N2R0 312 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 OR52B4Q8NGK2 314 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 CHST6Q9GZX3 395 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 PLEKHJ1Q9NW61 149 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 LHX6Q9UPM6 363 aa22.68■■□□□ 1.22
CCDC88C-205ENST00000553403 MBD3L4A6NDZ8 208 aaPredicted RBP22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 MBD3L3A6NE82 208 aaPredicted RBP22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 MBD3L5A6NJ08 208 aaPredicted RBP22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 RGS13O14921 159 aa22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 LYZL6O75951 148 aa22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 MICBQ29980 383 aa22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 OR51F2Q8NH61 342 aa22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 MBD3L2Q8NHZ7 208 aaPredicted RBP22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 ZNF431Q8TF32 576 aaPredicted RBP22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 GPR137Q96N19 417 aa22.67■■□□□ 1.22
CCDC88C-205ENST00000553403 PMP2P02689 132 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 SIGIRRQ6IA17 410 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 RFPL4BQ6ZWI9 263 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 NLRC3Q7RTR2 1065 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 ARRDC1Q8N5I2 433 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 Q8NFD4 153 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 OR5A2Q8NGI9 324 aa22.66■■□□□ 1.22
CCDC88C-205ENST00000553403 FIGNL2A6NMB9 653 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 OR4E1P0C645 316 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 AMY2BP19961 511 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 C4orf46Q504U0 113 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 C6orf201Q7Z4U5 140 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 ZNF611Q8N823 705 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 HPSE2Q8WWQ2 592 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 HIST1H2AAQ96QV6 131 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CDH20Q9HBT6 801 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CRIM1Q9NZV1 1036 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 RAXQ9Y2V3 346 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 BOLA1Q9Y3E2 137 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 MPC1Q9Y5U8 109 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 ANKRD30BLA7E2S9 258 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 K7EM74 188 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CRHP06850 196 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 GIPP09681 153 aaPredicted RBP22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CBR1P16152 277 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 PTGER4P35408 488 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 TAS2R46P59540 309 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 TAF9Q16594 264 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 PLEKHN1Q494U1 663 aaPredicted RBP22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CALHM1Q8IU99 346 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 MUC20Q8N307 709 aaPredicted RBP22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 OR5H2Q8NGV7 314 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 EMG1Q92979 244 aaKnown RBP22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 FGF23Q9GZV9 251 aaPredicted RBP22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 PLSCR3Q9NRY6 295 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 VSIG4Q9Y279 399 aa22.65■■□□□ 1.22
CCDC88C-205ENST00000553403 CHATP28329 748 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 FOXF2Q12947 444 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 FBXW12Q6X9E4 464 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 TMEM200AQ86VY9 491 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 MRGPRFQ96AM1 343 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 PROCRQ9UNN8 238 aa22.64■■□□□ 1.21
CCDC88C-205ENST00000553403 DMXL2Q8TDJ6 3036 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 H3BUI4 141 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 WDR1O75083 606 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 TNFSF13O75888 250 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 OR2A4O95047 310 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 TPOP07202 933 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms