RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CDC20BQ86Y33 519 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 C20orf196Q8IYI0 205 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 OR4A4PQ8NGN8 299 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 SLC37A2Q8TED4 501 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 PCOLCE2Q9UKZ9 415 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 G3V3Y1 287 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 ANGPTL7O43827 346 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NKX2-2O95096 273 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 CD8AP01732 235 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NDUFB7P17568 137 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 FAHD2BQ6P2I3 314 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-215ENST00000544547 CA13Q8N1Q1 262 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 APCDD1LQ8NCL9 501 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 OR13D1Q8NGV5 346 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 LHX4Q969G2 390 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 FAHD2AQ96GK7 314 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF845Q96IR2 970 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-215ENST00000544547 FAM103A1Q9BTL3 118 aaKnown RBP12.67□□□□□ -0.38
LIMS1-215ENST00000544547 KCNE5Q9UJ90 142 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 OSGIN2Q9Y236 505 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 CACNA1GO43497 2377 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 H0YL77 283 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 SLC31A2O15432 143 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 ACKR3P25106 362 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 OR3A4PP47883 348 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NPSR1Q6W5P4 371 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 SLC39A7Q92504 469 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF816-ZNF321PA0A0X1KG74 233 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ANKRD30BLA7E2S9 258 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 C4orf51C9J302 202 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 CST2P09228 141 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 MMP9P14780 707 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 HNF1AP20823 631 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ARL3P36405 182 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 HLA-DRB3P79483 266 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 HTD2P86397 168 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 FAM53BQ14153 422 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 NKAIN1Q4KMZ8 207 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 SLC35G3Q8N808 338 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF321PQ8N8H1 164 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 OR5C1Q8NGR4 320 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 IL22RA2Q969J5 263 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 CES1P1Q9UKY3 287 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 PIGLQ9Y2B2 252 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 LOC102725191A0A1B0GVB3 256 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 HRKO00198 91 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 HSD17B6O14756 317 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 UPK3AO75631 287 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ZIC2O95409 532 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-215ENST00000544547 FGF8P55075 233 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-215ENST00000544547 TSLPQ969D9 159 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 GNPNAT1Q96EK6 184 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-215ENST00000544547 TXNIPQ9H3M7 391 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 TGIF2-C20orf24A0A0A6YYL0 155 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 FIGNL2A6NMB9 653 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 IQCJQ1A5X6 159 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 C6orf201Q7Z4U5 140 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 AP1S3Q96PC3 154 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF576Q9H609 170 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 UCK1Q9HA47 277 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 A0A1W2PNV4 684 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 COLCA2A8K830 154 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 OR5AC1P0C628 307 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 DRD3P35462 400 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ADPRHP54922 357 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 CARD18P57730 90 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 NHLH2Q02577 135 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 ZIC1Q15915 447 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 PRICKLE4Q2TBC4 344 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 RARRES2Q99969 163 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 PARD6AQ9NPB6 346 aa12.66□□□□□ -0.38
LIMS1-215ENST00000544547 AKAP6Q13023 2319 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 LOC285556D6RIA3 1793 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 TRAV34A0A0B4J273 112 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 KLF4O43474 513 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 MRPL33O75394 65 aaKnown RBP12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PNPP00491 289 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PPP1CCP36873 323 aaKnown RBP12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF813Q6ZN06 617 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 REC114Q7Z4M0 266 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 OR4F5Q8NH21 305 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 OR4F4Q96R69 305 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 TP53TG5Q9Y2B4 290 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ANKRD36A6QL64 1941 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 IGKV1-8A0A0C4DH67 115 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 NPIPB9F8W1W9 429 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 VSIG8P0DPA2 414 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ADCYAP1P18509 176 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 PARM1Q6UWI2 310 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 SLC16A14Q7RTX9 510 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ADAMTS17Q8TE56 1095 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 HLA-CQ95604 372 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ELOVL1Q9BW60 279 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 S1PR5Q9H228 398 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 MSL2Q9HCI7 577 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 SH3BGRL2Q9UJC5 107 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ZDHHC8Q9ULC8 765 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 WDR90Q96KV7 1748 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ZDBF2Q9HCK1 2354 aa12.65□□□□□ -0.38
LIMS1-215ENST00000544547 ELOA3CA0A087WX78 387 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms