RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 CPNE2Q96FN4 548 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 FAM173AQ9BQD7 235 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 HDHD3Q9BSH5 251 aaPredicted RBP15.67■□□□□ 0.1
VIM-209ENST00000544301 ZNF391Q9UJN7 358 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 CSAG2Q9Y5P2 127 aa15.67■□□□□ 0.1
VIM-209ENST00000544301 MSTNO14793 375 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 KCNAB3O43448 404 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 ADAP1O75689 374 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 PLATP00750 562 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 NRASP01111 189 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 CSTBP04080 98 aaKnown RBP15.66■□□□□ 0.1
VIM-209ENST00000544301 RPS2P15880 293 aaKnown RBP15.66■□□□□ 0.1
VIM-209ENST00000544301 RBP2P50120 134 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 FAM74A1Q5RGS3 127 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 ASCL4Q6XD76 172 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 LHFPL2Q6ZUX7 228 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 HSD17B13Q7Z5P4 300 aaPredicted RBP15.66■□□□□ 0.1
VIM-209ENST00000544301 ZSCAN4Q8NAM6 433 aaPredicted RBP15.66■□□□□ 0.1
VIM-209ENST00000544301 PXT1Q8NFP0 134 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 TMEM45BQ96B21 275 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 SIGLEC12Q96PQ1 595 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 RNF126Q9BV68 326 aa15.66■□□□□ 0.1
VIM-209ENST00000544301 TRBV6-7A0A0A0MS04 114 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 hCG_38984A0A1B0GV85 526 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 MMP7P09237 267 aaPredicted RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 RFC3P40938 356 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 FAM3AP98173 230 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 ZNF92Q03936 586 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 SURF2Q15527 256 aaPredicted RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 ZNF100Q8IYN0 542 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 BVESQ8NE79 360 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 BORCS8Q96FH0 119 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 MICU1Q9BPX6 476 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 FAAP24Q9BTP7 215 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 RGCCQ9H4X1 137 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 B8ZZF3 427 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 LINC01387J3KSC0 135 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 RRP8O43159 456 aaKnown RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 IGHV3-9P01782 118 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 SP9P0CG40 484 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 NUP62P37198 522 aaPredicted RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 TAF9Q16594 264 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 TSPO2Q5TGU0 170 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 EIF4E3Q8N5X7 224 aaKnown RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 PHYHIPLQ96FC7 376 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 ZNF703Q9H7S9 590 aaPredicted RBP15.65■□□□□ 0.1
VIM-209ENST00000544301 ZNF581Q9P0T4 197 aa15.65■□□□□ 0.1
VIM-209ENST00000544301 IGKV3D-15A0A087WSY6 115 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 MPTX1A8MV57 137 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 LGALS8O00214 317 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 TERTO14746 1132 aaKnown RBP15.64■□□□□ 0.09
VIM-209ENST00000544301 CELA3AP09093 270 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 LHX2P50458 406 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 ABHD17BQ5VST6 288 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 MOB3CQ70IA8 216 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 DCUN1D4Q92564 292 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 ARPC5LQ9BPX5 153 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 HES7Q9BYE0 225 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 HSF4Q9ULV5 492 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 NOSIPQ9Y314 301 aaKnown RBP15.64■□□□□ 0.09
VIM-209ENST00000544301 KRBOX1C9JBD0 128 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 F5H0A9 414 aaPredicted RBP15.64■□□□□ 0.09
VIM-209ENST00000544301 H0YIZ8 118 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 CD59P13987 128 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 PGAM2P15259 253 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 SRYQ05066 204 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 PABPC1L2AQ5JQF8 200 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 CDCP2Q5VXM1 449 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 GALNT11Q8NCW6 608 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 GPR87Q9BY21 358 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 AK3Q9UIJ7 227 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 GPR160Q9UJ42 338 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 EDARQ9UNE0 448 aa15.64■□□□□ 0.09
VIM-209ENST00000544301 IGKV1-12A0A0C4DH73 117 aa15.63■□□□□ 0.09
VIM-209ENST00000544301 MRPL33O75394 65 aaKnown RBP15.63■□□□□ 0.09
VIM-209ENST00000544301 FARS2O95363 451 aaKnown RBP15.63■□□□□ 0.09
VIM-209ENST00000544301 IGKV1D-12P01611 117 aa15.63■□□□□ 0.09
VIM-209ENST00000544301 EDN3P14138 238 aa15.63■□□□□ 0.09
VIM-209ENST00000544301 TUSC1Q2TAM9 212 aa15.63■□□□□ 0.09
VIM-209ENST00000544301 CPEB3Q8NE35 698 aaKnown RBP15.63■□□□□ 0.09
VIM-209ENST00000544301 ZNF2Q9BSG1 426 aaPredicted RBP15.63■□□□□ 0.09
VIM-209ENST00000544301 ANXA10Q9UJ72 324 aa15.63■□□□□ 0.09
VIM-209ENST00000544301 C14orf166Q9Y224 244 aaKnown RBP15.63■□□□□ 0.09
VIM-209ENST00000544301 TEX13DA0A0J9YY54 714 aaPredicted RBP15.62■□□□□ 0.09
VIM-209ENST00000544301 C21orf140B9A014 251 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 KNG1P01042 644 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 CHATP28329 748 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 FUT6P51993 359 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 OR8B8Q15620 311 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 NRN1LQ496H8 165 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 RRNAD1Q96FB5 475 aaKnown RBP15.62■□□□□ 0.09
VIM-209ENST00000544301 OR10C1Q96KK4 312 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 C1QTNF5Q9BXJ0 243 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 METTL8Q9H825 291 aaKnown RBP15.62■□□□□ 0.09
VIM-209ENST00000544301 BARX1Q9HBU1 254 aaPredicted RBP15.62■□□□□ 0.09
VIM-209ENST00000544301 B4GALT7Q9UBV7 327 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 A0A1B0GW55 424 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 DUX4L2P0CJ85 424 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 DUX4L3P0CJ86 424 aa15.62■□□□□ 0.09
VIM-209ENST00000544301 DUX4L4P0CJ87 422 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms