RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RTN4IP1Q8WWV3 396 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 PFDN5Q99471 154 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 SLC35B3Q9H1N7 401 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 URGCP-MRPS24S4R325 110 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 CEP290O15078 2479 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 CTSDP07339 412 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 OMGP23515 440 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 NDUFA6P56556 154 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 NHLH2Q02577 135 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 BRICD5Q6PL45 260 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 Q6ZS52 159 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 C20orf196Q8IYI0 205 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 SLC25A43Q8WUT9 341 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 MVB12AQ96EY5 273 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 FAAP24Q9BTP7 215 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 B3GAT1Q9P2W7 334 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 CABIN1Q9Y6J0 2220 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 GPR37O15354 613 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TLX3O43711 291 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 DANCRP0C864 163 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 PAX6P26367 422 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 S100A2P29034 98 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 PPP1CCP36873 323 aaKnown RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 CSNK1EP49674 416 aaKnown RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 RAB5CP51148 216 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 CCR5P51681 352 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 ARL6IP1Q15041 203 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TMEM176BQ3YBM2 270 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 C9orf50Q5SZB4 431 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 COMMD1Q8N668 190 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 OR14K1Q8NGZ2 314 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SLC22A8Q8TCC7 542 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SHDQ96IW2 340 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 JSRP1Q96MG2 331 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TMPRSS5Q9H3S3 457 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 C8orf33Q9H7E9 229 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 WFDC1Q9HC57 220 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 RCL1Q9Y2P8 373 aaKnown RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 FAM230AA0A1W2PPH8 454 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SLC33A1O00400 549 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SEC11BP0C7V7 166 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 MTCP1P56278 107 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 PRSS12P56730 875 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 CLDN17P56750 224 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF674Q2M3X9 581 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 STT3BQ8TCJ2 826 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 RHBDD1Q8TEB9 315 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 MRPL13Q9BYD1 178 aaKnown RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TOLLIPQ9H0E2 274 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 PGA4P0DJD7 388 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 PGA3P0DJD8 388 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 MYF5P13349 255 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 RGS19P49795 217 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 RSU1Q15404 277 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 CPEB2Q7Z5Q1 589 aaKnown RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TMEM156Q8N614 296 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SUMF1Q8NBK3 374 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 SEBOXQ9HB31 216 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-237ENST00000539504 GPR173Q9NS66 373 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 KLHL13Q9P2N7 655 aa9.87□□□□□ -0.83
SYNE1-237ENST00000539504 TRBV11-1A0A0K0K1C0 115 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 CRYM-AS1A6NIL9 109 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 E9PLN8 166 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 EFNA2O43921 213 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 GPR137BO60478 399 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 RAMP1O60894 148 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 THBS4P35443 961 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ECI1P42126 302 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 GRB2P62993 217 aaKnown RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 GNMTQ14749 295 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 RHEBQ15382 184 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 UBE2V2Q15819 145 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 CDCP2Q5VXM1 449 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 FAM89BQ8N5H3 189 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 DYRK2Q92630 601 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 RARRES2Q99969 163 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 WDR77Q9BQA1 342 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ANXA10Q9UJ72 324 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 CCDC163A0A0D9SF12 145 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 A0A1B0GX78 115 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ST8SIA3O43173 380 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 HEXBP07686 556 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 AFF3P51826 1226 aaKnown RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 DLX2Q07687 328 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 HYAL1Q12794 435 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 SMAD4Q13485 552 aaKnown RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF441Q8N8Z8 693 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 SLC39A7Q92504 469 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 CDCA3Q99618 268 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 OR5H15A6NDH6 313 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 NPIPB13A6NJU9 1138 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF727A8MUV8 499 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 NPIPB4C9JG80 1138 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 H7C1Q1 480 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 PHF1O43189 567 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 SPRY1O43609 319 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 P2RY1P47900 373 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ZFP62Q8NB50 900 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-237ENST00000539504 SGK3Q96BR1 496 aa9.86□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF775Q96BV0 537 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms