RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ADI1Q9BV57 179 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 PLEKHA1Q9HB21 404 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 RASL12Q9NYN1 266 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 SLC25A10Q9UBX3 287 aaPredicted RBP12.2□□□□□ -0.46
USP28-204ENST00000537642 MPZL2O60487 215 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 NOS1APO75052 506 aaPredicted RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 UBCP0CG48 685 aaKnown RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 DBTP11182 482 aaKnown RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 MPZP25189 248 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 BPIFB3P59826 476 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 NANOS3P60323 173 aaKnown RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 PDCD1Q15116 288 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 UBE2V2Q15819 145 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 ZSCAN26Q16670 478 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 DEFB112Q30KQ8 113 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 FDX2Q6P4F2 183 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 C12orf54Q6X4T0 127 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 ANGPTL5Q86XS5 388 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 CALHM1Q8IU99 346 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 CCDC54Q8NEL0 328 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 C8orf46Q8TAG6 207 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 TRMT10AQ8TBZ6 339 aaKnown RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 NPRL2Q8WTW4 380 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 H1FXQ92522 213 aaKnown RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 GCDHQ92947 438 aaPredicted RBP12.19□□□□□ -0.46
USP28-204ENST00000537642 STMN2Q93045 179 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 LHX4Q969G2 390 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 FRRS1LQ9P0K9 344 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 MAB21L2Q9Y586 359 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 PCDHGB1Q9Y5G3 927 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 KPTNQ9Y664 436 aa12.19□□□□□ -0.46
USP28-204ENST00000537642 J3QLW9 94 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 ZNF19P17023 458 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 COMPP49747 757 aaPredicted RBP12.18□□□□□ -0.46
USP28-204ENST00000537642 CAV3P56539 151 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 SLC9A3R2Q15599 337 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 SMIM21Q3B7S5 101 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 VMO1Q7Z5L0 202 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 BATF2Q8N1L9 274 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 ZNRF1Q8ND25 227 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 APH1BQ8WW43 257 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 PELI1Q96FA3 418 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 SDSLQ96GA7 329 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 DMRTB1Q96MA1 342 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 Q96MT0 163 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 NRIP2Q9BQI9 281 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 CHST5Q9GZS9 411 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 PRDM13Q9H4Q3 707 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 ZMAT3Q9HA38 289 aaKnown RBP12.18□□□□□ -0.46
USP28-204ENST00000537642 ELL3Q9HB65 397 aaPredicted RBP12.18□□□□□ -0.46
USP28-204ENST00000537642 AMBNQ9NP70 447 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 ONECUT1Q9UBC0 465 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 SLC7A11Q9UPY5 501 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 MYRFQ9Y2G1 1151 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 POLDIP2Q9Y2S7 368 aa12.18□□□□□ -0.46
USP28-204ENST00000537642 IGKV1-27A0A075B6S5 117 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 IGHV1-69DA0A0B4J2H0 117 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 FAM230AA0A1W2PPH8 454 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 RFPL4AA6NLU0 287 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 RFPL4AL1F8VTS6 287 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 CLDN34H7C241 214 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 GATBO75879 557 aaKnown RBP12.17□□□□□ -0.46
USP28-204ENST00000537642 NXPH2O95156 264 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 IGHV1-69P01742 117 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 IGHA1P01876 353 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 RNASE1P07998 156 aaKnown RBP12.17□□□□□ -0.46
USP28-204ENST00000537642 HTR1AP08908 422 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 NDUFB7P17568 137 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 ERVK11-1P61568 191 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 GALEQ14376 348 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 TMEM244Q5VVB8 128 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 LHFPL3Q86UP9 236 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 CD177Q8N6Q3 437 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 KIR3DL3Q8N743 410 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 Q8N7P7 452 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 TMEM185AQ8NFB2 350 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 GATAD2BQ8WXI9 593 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 C10orf35Q96D05 121 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 ADAT3Q96EY9 351 aaPredicted RBP12.17□□□□□ -0.46
USP28-204ENST00000537642 C4orf36Q96KX1 117 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 RDH12Q96NR8 316 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 ZNF649Q9BS31 505 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 ALG8Q9BVK2 526 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 PKIBQ9C010 78 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 HES4Q9HCC6 221 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 SMPD3Q9NY59 655 aaPredicted RBP12.17□□□□□ -0.46
USP28-204ENST00000537642 TENM1Q9UKZ4 2725 aa12.17□□□□□ -0.46
USP28-204ENST00000537642 WBP4O75554 376 aaKnown RBP12.16□□□□□ -0.46
USP28-204ENST00000537642 ISG15P05161 165 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 PRDX2P32119 198 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 CEBPDP49716 269 aaPredicted RBP12.16□□□□□ -0.46
USP28-204ENST00000537642 CCR9P51686 369 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 FUT6P51993 359 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 DLX1P56177 255 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 ACTA2P62736 377 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 ACTG2P63267 376 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 PRB3Q04118 309 aaPredicted RBP12.16□□□□□ -0.46
USP28-204ENST00000537642 IL24Q13007 206 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 PDZD9Q8IXQ8 264 aa12.16□□□□□ -0.46
USP28-204ENST00000537642 CMTM4Q8IZR5 234 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms