RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DNAAF1Q8NEP3 725 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 ZNF671Q8TAW3 534 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 FGGYQ96C11 551 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 TECTBQ96PL2 329 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 CCL13Q99616 98 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 NRIP2Q9BQI9 281 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 RASSF4Q9H2L5 321 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 PLEKHA1Q9HB21 404 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 HES4Q9HCC6 221 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 BABAM2Q9NXR7 383 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 RASL12Q9NYN1 266 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4Q9UBX2 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 OR5V1Q9UGF6 321 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 HHLA2Q9UM44 414 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 EXOSC1Q9Y3B2 195 aaKnown RBP10.77□□□□□ -0.69
VPS28-216ENST00000533806 SIRT4Q9Y6E7 314 aaPredicted RBP10.77□□□□□ -0.69
VPS28-216ENST00000533806 IGKV1D-17A0A075B6S4 117 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 EFCAB10A6NFE3 127 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 TMEM212A6NML5 194 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 DVL1O14640 695 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 TMPRSS2O15393 492 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 OGG1O15527 345 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 GATBO75879 557 aaKnown RBP10.76□□□□□ -0.69
VPS28-216ENST00000533806 LALBAP00709 142 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 IFNA2P01563 188 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 MT-ND2P03891 347 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 RPSAP08865 295 aaKnown RBP10.76□□□□□ -0.69
VPS28-216ENST00000533806 FUT6P51993 359 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 IL24Q13007 206 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 KLF17Q5JT82 389 aaPredicted RBP10.76□□□□□ -0.69
VPS28-216ENST00000533806 RPL22L1Q6P5R6 122 aaKnown RBP10.76□□□□□ -0.69
VPS28-216ENST00000533806 ANGPTL5Q86XS5 388 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 FGFRL1Q8N441 504 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 TEX29Q8N6K0 151 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 OR5T2Q8NGG2 359 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 OR52N1Q8NH53 320 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 OR5AK2Q8NH90 309 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 RGP1Q92546 391 aaPredicted RBP10.76□□□□□ -0.69
VPS28-216ENST00000533806 PDCD1LG2Q9BQ51 273 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 PKIBQ9C010 78 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 NLKQ9UBE8 527 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 AUP1Q9Y679 476 aa10.76□□□□□ -0.69
VPS28-216ENST00000533806 OR2AT4A6NND4 320 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 SIGLEC5O15389 551 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ALX3O95076 343 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 SERPINA3P01011 423 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 TFF1P04155 84 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 CCDC159P0C7I6 412 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 PSG2P11465 335 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ADRA2CP18825 462 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 GLRA1P23415 457 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 C21orf33P30042 268 aaPredicted RBP10.75□□□□□ -0.69
VPS28-216ENST00000533806 SRP14P37108 136 aaKnown RBP10.75□□□□□ -0.69
VPS28-216ENST00000533806 DOC2BQ14184 412 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 CDK5R1Q15078 307 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 C6orf141Q5SZD1 244 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 CD276Q5ZPR3 534 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ZNF529Q6P280 563 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 TMPRSS11AQ6ZMR5 421 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ACP7Q6ZNF0 438 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 PARP16Q8N5Y8 322 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 FAM216BQ8N7L0 139 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ZNF676Q8N7Q3 588 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 LY6G5BQ8NDX9 201 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 BPIFB6Q8NFQ5 453 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 NANPQ8TBE9 248 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 UPRTQ96BW1 309 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 SDSLQ96GA7 329 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 ZNF488Q96MN9 340 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 GAFA1Q96PS6 74 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 NUDT16L1Q9BRJ7 211 aaKnown RBP10.75□□□□□ -0.69
VPS28-216ENST00000533806 ANKRD60Q9BZ19 345 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 SNTG1Q9NSN8 517 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 MTCH1Q9NZJ7 389 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 SLC7A11Q9UPY5 501 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 WNK2Q9Y3S1 2297 aa10.75□□□□□ -0.69
VPS28-216ENST00000533806 TRBV2A0A0J9YWF9 115 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 FAM230AA0A1W2PPH8 454 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 F8VVB4 439 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 F8VWA3 439 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 GPR37O15354 613 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 ATP6V1G2O95670 118 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 SELLP14151 372 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 ATF1P18846 271 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 MYL12AP19105 171 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 MYF6P23409 242 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 GMFBP60983 142 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 DGUOKQ16854 277 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 RNLSQ5VYX0 342 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 DMKNQ6E0U4 476 aaPredicted RBP10.74□□□□□ -0.69
VPS28-216ENST00000533806 ASPHD2Q6ICH7 369 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 SLC36A1Q7Z2H8 476 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 RNF144BQ7Z419 303 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 OR13C3Q8NGS6 347 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 TRMT10AQ8TBZ6 339 aaKnown RBP10.74□□□□□ -0.69
VPS28-216ENST00000533806 NPRL2Q8WTW4 380 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 GATAD2BQ8WXI9 593 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 TMIGD2Q96BF3 282 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 DMRTB1Q96MA1 342 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 DNAJB11Q9UBS4 358 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms