RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TRAV19	A0A0A6YYK7	116 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110		A0A0B4J2A0	478 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110		A0A1W2PR80	420 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	IRGM	A1A4Y4	181 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM189	A5PLL7	270 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	FAM166B	A8MTA8	275 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF705E	A8MWA4	302 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110		C9JVG2	144 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	CLDN34	H7C241	214 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	APOC4-APOC2	K7ER74	178 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SOX15	O60248	233 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TOX	O94900	526 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TRUB2	O95900	331 aa	Known RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ACTL6A	O96019	429 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OPN1SW	P03999	348 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	CD74	P04233	296 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SOD3	P08294	240 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	MPC1L	P0DKB6	136 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ESD	P10768	282 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	PNMT	P11086	282 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TPT1	P13693	172 aa	Known RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SHC1	P29353	583 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	MIP	P30301	263 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ADORA1	P30542	326 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	DCT	P40126	519 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	MDH2	P40926	338 aa	Known RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	CRYBB2	P43320	205 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	UCN	P55089	124 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	HIST1H3A	P68431	136 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	BTN3A2	P78410	334 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	GAGE5	Q13069	117 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	GAGE6	Q13070	117 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SNAI3	Q3KNW1	292 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	VWA2	Q5GFL6	755 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	LDLRAD2	Q5SZI1	272 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	FAM78B	Q5VT40	261 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SLC8B1	Q6J4K2	584 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TEX43	Q6ZNM6	134 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	COMMD6	Q7Z4G1	85 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	LRRTM1	Q86UE6	522 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	FBXO16	Q8IX29	292 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	BOD1L2	Q8IYS8	172 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	BEST3	Q8N1M1	668 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SCCPDH	Q8NBX0	429 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	NEXN-AS1	Q8NBZ9	246 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	NPEPL1	Q8NDH3	523 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	RDM1	Q8NG50	284 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OR4K1	Q8NGD4	311 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OR51A2	Q8NGJ7	313 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OR2A12	Q8NGT7	310 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	RHEBL1	Q8TAI7	183 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF519	Q8TB69	540 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF564	Q8TBZ8	553 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	DNASE2B	Q8WZ79	361 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OR4K3	Q96R72	315 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	LYSMD1	Q96S90	227 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ARHGDIG	Q99819	225 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	TIMM29	Q9BSF4	260 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	RAB11FIP5	Q9BXF6	653 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SELENOI	Q9C0D9	397 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ATG10	Q9H0Y0	220 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SRMS	Q9H3Y6	488 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	ELL3	Q9HB65	397 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	PARP11	Q9NR21	331 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SLC7A10	Q9NS82	523 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	GPR83	Q9NYM4	423 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	BET1L	Q9NYM9	111 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	AHSP	Q9NZD4	102 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	OR6C3	Q9NZP0	311 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	SHPK	Q9UHJ6	478 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	FBXW2	Q9UKT8	454 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	EXO1	Q9UQ84	846 aa	Known RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	C14orf166	Q9Y224	244 aa	Known RBP	4.85	□□□□□ -1.63
CD44-231	ENST00000531110	HDGFL3	Q9Y3E1	203 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	DOT1L	Q8TEK3	1739 aa		4.85	□□□□□ -1.63
CD44-231	ENST00000531110	DLEC1	Q9Y238	1755 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	PEAK1	Q9H792	1746 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TRBV24-1	A0A075B6N3	115 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110		A0A087WV48	116 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TRAV38-1	A0A0B4J264	116 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110		A0A0J9YY10	115 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	hCG_38984	A0A1B0GV85	526 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110		A0A1B0GX78	115 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	MBLAC1	A4D2B0	266 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OR2AG2	A6NM03	316 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110		J3QR89	54 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FXYD1	O00168	92 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RAB29	O14966	203 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	B4GALT5	O43286	388 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	HCRTR1	O43613	425 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	DUX1	O43812	170 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FCMR	O60667	390 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	S1PR2	O95136	353 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FCGR3A	P08637	254 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	PSG2	P11465	335 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FABP4	P15090	132 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ATF1	P18846	271 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FUT1	P19526	365 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OR1D2	P34982	312 aa		4.84	□□□□□ -1.63

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