RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PNLIPRP3Q17RR3 467 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 PHF19Q5T6S3 580 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 FIP1L1Q6UN15 594 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 FAM57BQ71RH2 274 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 C17orf82Q86X59 251 aaPredicted RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 BATF2Q8N1L9 274 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 DTWD2Q8NBA8 298 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 OR13G1Q8NGZ3 307 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SNX22Q96L94 193 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 RNF122Q9H9V4 155 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 PLEKHJ1Q9NW61 149 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SLC7A11Q9UPY5 501 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 MED12Q93074 2177 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 IGHV1OR21-1A0A087WYE8 117 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 HSPB2A8KAH6 182 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 A8MVM7 634 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H1DP16402 221 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 ZNF708P17019 499 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SNCAP37840 140 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 VAMP2P63027 116 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 DMWDQ09019 674 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 HSPB2Q16082 182 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SPIN3Q5JUX0 258 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SHISA6Q6ZSJ9 500 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 OR1N1Q8NGS0 311 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 HPSE2Q8WWQ2 592 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 PIGTQ969N2 578 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 MARS2Q96GW9 593 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 THOC3Q96J01 351 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 PBOV1Q9GZY1 135 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SMOC1Q9H4F8 434 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 DNAJB11Q9UBS4 358 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 MRPS17Q9Y2R5 130 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 LIPGQ9Y5X9 500 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 A0A1W2PQD3 144 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 URB1O60287 2271 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 TSPAN2O60636 221 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 BPNT1O95861 308 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 FOLR1P15328 257 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 CSRP1P21291 193 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 DDTP30046 118 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 CDX1P47902 265 aaPredicted RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 NXPH1P58417 271 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 RPS23P62266 143 aaKnown RBP8.51□□□□□ -1.05
VCAN-210ENST00000513960 C1orf140Q5VVS0 124 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 ARRDC1Q8N5I2 433 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 NECAP1Q8NC96 275 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 CADM4Q8NFZ8 388 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SLC26A10Q8NG04 563 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 OR5T1Q8NG75 326 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 KCNG3Q8TAE7 436 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 SLAMF6Q96DU3 332 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 MAGT1Q9H0U3 335 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 OR10A2Q9H208 303 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 RFNGQ9Y644 331 aa8.51□□□□□ -1.05
VCAN-210ENST00000513960 GEMIN2O14893 280 aaKnown RBP8.5□□□□□ -1.05
VCAN-210ENST00000513960 TCAPO15273 167 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 SOX15O60248 233 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 PIAS2O75928 621 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 SELLP14151 372 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 IL11P20809 199 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 NHLH2Q02577 135 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 TLE3Q04726 772 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 STT3BQ8TCJ2 826 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 NIPSNAP3BQ9BS92 247 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 ATG101Q9BSB4 218 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 SOX7Q9BT81 388 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 FGF21Q9NSA1 209 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 AK3Q9UIJ7 227 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 SLC5A6Q9Y289 635 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 A0A1B0GX78 115 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 HTR5AP47898 357 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 PPA1Q15181 289 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 Q7L0L9 218 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 GRINAQ7Z429 371 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 DMRTC2Q8IXT2 367 aaPredicted RBP8.5□□□□□ -1.05
VCAN-210ENST00000513960 POC1AQ8NBT0 407 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 TMEM234Q8WY98 164 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 RAB39BQ96DA2 213 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 C14orf144Q96I85 54 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 PHF7Q9BWX1 381 aaPredicted RBP8.5□□□□□ -1.05
VCAN-210ENST00000513960 VN1R1Q9GZP7 353 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 TXNIPQ9H3M7 391 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 CABIN1Q9Y6J0 2220 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 WIPF3A6NGB9 483 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 F5H5K5 113 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 H3BQ15 152 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 SCGNO76038 276 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 CHRM2P08172 466 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 HLA-GP17693 338 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 GUCA1AP43080 201 aaPredicted RBP8.5□□□□□ -1.05
VCAN-210ENST00000513960 PRSS12P56730 875 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 RAB11AP62491 216 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 RAB1AP62820 205 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 TOMM20Q15388 145 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 ZNF429Q86V71 674 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 TGIF2LXQ8IUE1 241 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 HDHD3Q9BSH5 251 aaPredicted RBP8.5□□□□□ -1.05
VCAN-210ENST00000513960 GPR84Q9NQS5 396 aa8.5□□□□□ -1.05
VCAN-210ENST00000513960 GAB2Q9UQC2 676 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms