RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 TRGV5A0A0B4J1U4 118 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 A0A0J9YW62 118 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 SOCS1O15524 211 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 EIF1BO60739 113 aaKnown RBP14□□□□□ -0.17
SQSTM1-213ENST00000510187 CA11O75493 328 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 VAMP5O95183 116 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 AKR1C4P17516 323 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 PSMB6P28072 239 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 GUCA1AP43080 201 aaPredicted RBP14□□□□□ -0.17
SQSTM1-213ENST00000510187 CSNK1A1P48729 337 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 H3F3AP84243 136 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 RTL6Q6ICC9 239 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 PEG10Q86TG7 708 aaKnown RBP14□□□□□ -0.17
SQSTM1-213ENST00000510187 GGNQ86UU5 652 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 RELL2Q8NC24 303 aaPredicted RBP14□□□□□ -0.17
SQSTM1-213ENST00000510187 MARCH1Q8TCQ1 289 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 CASTOR1Q8WTX7 329 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 TAAR6Q96RI8 345 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 ZNF471Q9BX82 626 aaPredicted RBP14□□□□□ -0.17
SQSTM1-213ENST00000510187 WDR13Q9H1Z4 485 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 OR10A2Q9H208 303 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 RAB18Q9NP72 206 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 LUZP4Q9P127 313 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 MBD2Q9UBB5 411 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 LHX6Q9UPM6 363 aa14□□□□□ -0.17
SQSTM1-213ENST00000510187 PHF3Q92576 2039 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 FAM25EA8MYX2 175 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 RAMP1O60894 148 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 CRTAPO75718 401 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 SFT2D2O95562 160 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 APOC1P02654 83 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 SLC2A1P11166 492 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PRKACBP22694 351 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 SUCLG1P53597 346 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 TMEM50BP56557 158 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 CLDN17P56750 224 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 TAS2R46P59540 309 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 CSNK2A1P68400 391 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 SNTB1Q13884 538 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PPA1Q15181 289 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 LRRC37A5PQ49AS3 106 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PAN3Q58A45 887 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 RPUSD3Q6P087 351 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 UQCC3Q6UW78 93 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 GJC3Q8NFK1 279 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 OR5H2Q8NGV7 314 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PP6455Q8WZ26 134 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PGAM5Q96HS1 289 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 SPACA5Q96QH8 159 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 GPER1Q99527 375 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 NELFAQ9H3P2 528 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 PRORYQ9H606 182 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 CHMP1AQ9HD42 196 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 TUBD1Q9UJT1 453 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 V9GYS6 101 aa13.99□□□□□ -0.17
SQSTM1-213ENST00000510187 IGKV1-9A0A0C4DH69 117 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 FOXI3A8MTJ6 420 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 F8VVB4 439 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 F8VWA3 439 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 LGALS8O00214 317 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SMAD9O15198 467 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 ACTL6AO96019 429 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 NAT2P11245 290 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 LHX2P50458 406 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 HIST1H3AP68431 136 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 NAAAQ02083 359 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 HIST2H3PS2Q5TEC6 136 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 HIST2H3AQ71DI3 136 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 KCTD9Q7L273 389 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 LHFPL1Q86WI0 220 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 INTS12Q96CB8 462 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SOX7Q9BT81 388 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 ZNF416Q9BWM5 594 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 COQ3Q9NZJ6 369 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 TEX13DA0A0J9YY54 714 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 C5orf51A6NDU8 294 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 RAD51DO75771 328 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 AMY2BP19961 511 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SERPINF1P36955 418 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 CARD18P57730 90 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SRYQ05066 204 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 PXDC1Q5TGL8 231 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SLC16A14Q7RTX9 510 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 RNF144BQ7Z419 303 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 OR2V1Q8NHB1 315 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 ARHGAP5-AS1Q96IT6 56 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 NAA11Q9BSU3 229 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 TM2D1Q9BX74 207 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 PIGMQ9H3S5 423 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 BANF2Q9H503 90 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 FLVCR1Q9Y5Y0 555 aa13.98□□□□□ -0.17
SQSTM1-213ENST00000510187 SERPINE3A8MV23 424 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 EEF1E1-BLOC1S5C9J1V9 151 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 F5H0A9 414 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 DHRS3O75911 302 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 IGHG3P01860 377 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 LYL1P12980 280 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 ZNF708P17019 499 aa13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 OTX1P32242 354 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-213ENST00000510187 PTGFRP43088 359 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms