RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RASSF6Q6ZTQ3 369 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PAQR9Q6ZVX9 377 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CYS1Q717R9 158 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ABHD13Q7L211 337 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SSX7Q7RTT5 188 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PRSS48Q7RTY5 328 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 APTXQ7Z2E3 356 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 TMEM144Q7Z5S9 345 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZNF546Q86UE3 836 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CALHM1Q8IU99 346 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CRLF3Q8IUI8 442 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PGAM4Q8N0Y7 254 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LRRC75A-AS1Q8N1F1 130 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SVBPQ8N300 66 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DHRSXQ8N5I4 330 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TMEM156Q8N614 296 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZNF557Q8N988 423 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 ATP6V1C2Q8NEY4 427 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PROKR2Q8NFJ6 384 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR4F15Q8NGB8 312 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR4D6Q8NGJ1 314 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR52B4Q8NGK2 314 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR9Q1Q8NGQ5 310 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR8U1Q8NH10 309 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR51F2Q8NH61 342 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 WDR36Q8NI36 951 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 KCNG3Q8TAE7 436 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RHEBL1Q8TAI7 183 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 NEIL3Q8TAT5 605 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PIGXQ8TBF5 258 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 APH1BQ8WW43 257 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DNAJB3Q8WWF6 145 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LCN9Q8WX39 176 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ASB13Q8WXK3 278 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TMEM234Q8WY98 164 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ACOT12Q8WYK0 555 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OSTF1Q92882 214 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DCUN1D1Q96GG9 259 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SFRP2Q96HF1 295 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MS4A14Q96JA4 679 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AKR1E2Q96JD6 320 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SMIM14Q96QK8 99 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ACCSQ96QU6 501 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZNF382Q96SR6 550 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 NPY6RQ99463 290 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 HOPXQ9BPY8 73 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 KCTD14Q9BQ13 255 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 VPS25Q9BRG1 176 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DCUN1D5Q9BTE7 237 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CCDC32Q9BV29 185 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RIOK2Q9BVS4 552 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 HCAR1Q9BXC0 346 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 REG4Q9BYZ8 158 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 NKX6-2Q9C056 277 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 ATG10Q9H0Y0 220 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR51J1Q9H342 316 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 BOLA2Q9H3K6 86 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 GLIPR2Q9H4G4 154 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ELOVL6Q9H5J4 265 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 WDR55Q9H6Y2 383 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 MEAF6Q9HAF1 191 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 APMAPQ9HDC9 416 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR2S2Q9NQN1 319 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 INPP5EQ9NRR6 644 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AGPAT4Q9NRZ5 378 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 STARD5Q9NSY2 213 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C14orf105Q9NVL8 296 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RASL12Q9NYN1 266 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DHCR7Q9UBM7 475 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 SEC14L3Q9UDX4 400 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MRTO4Q9UKD2 239 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 FBXL3Q9UKT7 428 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZNF490Q9ULM2 529 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 PRPF19Q9UMS4 504 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 FLVCR2Q9UPI3 526 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZFP30Q9Y2G7 519 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 HSPB11Q9Y547 144 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PCYT1BQ9Y5K3 369 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 MAP2P11137 1827 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 NFASCO94856 1347 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CDK5RAP2Q96SN8 1893 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OTOFQ9HC10 1997 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZFYVE9O95405 1425 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SNAPC4Q5SXM2 1469 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ABCC10Q5T3U5 1492 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LRRC9Q6ZRR7 1453 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 EFCAB5A4FU69 1503 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 HMGXB3Q12766 1538 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 KDM5CP41229 1560 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 BICRAQ9NZM4 1560 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 PREX2Q70Z35 1606 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 HECW1Q76N89 1606 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ZC3H13Q5T200 1668 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 KIAA1551Q9HCM1 1747 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 N4BP2Q86UW6 1770 aaPredicted RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 PHIPQ8WWQ0 1821 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TRBV7-9A0A0J9YWB2 115 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CIB4A0PJX0 185 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 TMEM72A0PK05 275 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 YJEFN3A6XGL0 299 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms