RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 KCNK2O95069 426 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 SMC2O95347 1197 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 GCGP01275 180 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 OR4Q2P0C623 313 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 OR5AC1P0C628 307 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 HLA-GP17693 338 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 LGALS3P17931 250 aaKnown RBP1.54□□□□□ -2.16
VPS50-219ENST00000495039 NUDT2P50583 147 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 CLDN8P56748 225 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 MEF2CQ06413 473 aaPredicted RBP1.54□□□□□ -2.16
VPS50-219ENST00000495039 ST3GAL4Q11206 333 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 HCP5Q6MZN7 132 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 OR4D6Q8NGJ1 314 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 OR6K6Q8NGW6 343 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 CMTM2Q8TAZ6 248 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 TCP10LQ8TDR4 215 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 RBPMSQ93062 196 aaKnown RBP1.54□□□□□ -2.16
VPS50-219ENST00000495039 OR2V2Q96R30 315 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 VSIRQ9H7M9 311 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 ZMAT5Q9UDW3 170 aaKnown RBP1.54□□□□□ -2.16
VPS50-219ENST00000495039 ELP1O95163 1332 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 TTC41PQ6P2S7 1318 aa1.54□□□□□ -2.16
VPS50-219ENST00000495039 H0YIV9 168 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 NDUFS5O43920 106 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 KLK1P06870 262 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 SEC11BP0C7V7 166 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 CCT6AP40227 531 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 TUFMP49411 452 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 LAMTOR4Q0VGL1 99 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 HIKESHIQ53FT3 197 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 PYDC2Q56P42 97 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 MRPL2Q5T653 305 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 ZBED9Q6R2W3 1325 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 SLC35D2Q76EJ3 337 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 FA2HQ7L5A8 372 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 PAGE2Q7Z2X7 111 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 OR5T3Q8NGG3 340 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 FAM57AQ8TBR7 257 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 ITLN2Q8WWU7 325 aaPredicted RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 BAALCQ8WXS3 180 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 OR8D1Q8WZ84 308 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 ISG20Q96AZ6 181 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 RNF170Q96K19 258 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 PEBP4Q96S96 227 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 MRPL20Q9BYC9 149 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 SND1-IT1Q9HBX3 110 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 C6orf50Q9HD87 102 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 ABCB9Q9NP78 766 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 PEF1Q9UBV8 284 aaKnown RBP1.53□□□□□ -2.16
VPS50-219ENST00000495039 PSME2Q9UL46 239 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 R4GN34 69 aa1.53□□□□□ -2.16
VPS50-219ENST00000495039 SETD1AO15047 1707 aaKnown RBP1.52□□□□□ -2.17
VPS50-219ENST00000495039 NEURL4Q96JN8 1562 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 SSH2Q76I76 1423 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 MROH5Q6ZUA9 1318 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 IGHG2P01859 326 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 CDK1P06493 297 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 MSR1P21757 451 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 TUBG1P23258 451 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 BCAP31P51572 246 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 HCCSP53701 268 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 DAOAP59103 153 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 FMODQ06828 376 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 SPAG1Q07617 926 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 TTC32Q5I0X7 151 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 LDLRAD2Q5SZI1 272 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 CPTPQ5TA50 214 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 ZNF660Q6AZW8 331 aaPredicted RBP1.52□□□□□ -2.17
VPS50-219ENST00000495039 AMMECR1LQ6DCA0 310 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 VTCN1Q7Z7D3 282 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 ZDHHC22Q8N966 263 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 OR4C13Q8NGP0 309 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 ZFAND1Q8TCF1 268 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 TSNAXQ99598 290 aaKnown RBP1.52□□□□□ -2.17
VPS50-219ENST00000495039 IL22Q9GZX6 179 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 OR2AG1Q9H205 316 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 ABCG5Q9H222 651 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 RGCCQ9H4X1 137 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 TUBG2Q9NRH3 451 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 MCTS1Q9ULC4 181 aaKnown RBP1.52□□□□□ -2.17
VPS50-219ENST00000495039 CFL2Q9Y281 166 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 KLF12Q9Y4X4 402 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 ORC6Q9Y5N6 252 aa1.52□□□□□ -2.17
VPS50-219ENST00000495039 BAZ1BQ9UIG0 1483 aaKnown RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 C9JQL5 133 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 C15orf65H3BRN8 121 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 H7C2Y5 167 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 CXorf1O96002 111 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 SNRPAP09012 282 aaKnown RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 SFTPCP11686 197 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 PAX6P26367 422 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 CFHR2P36980 270 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 PEX19P40855 299 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 CSKP41240 450 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 KLF3P57682 345 aaPredicted RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 RPL10AP62906 217 aaKnown RBP1.51□□□□□ -2.17
VPS50-219ENST00000495039 SLC35B1P78383 322 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 DOC2AQ14183 400 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 LIN9Q5TKA1 542 aa1.51□□□□□ -2.17
VPS50-219ENST00000495039 SMARCD3Q6STE5 483 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms