RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HEBP1Q9NRV9 189 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 RNF17Q9BXT8 1623 aaKnown RBP3.25□□□□□ -1.89
VPS13A-212ENST00000493341 NCOA2Q15596 1464 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 LRRC9Q6ZRR7 1453 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 TET2Q6N021 2002 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 A0A1B0GX12 115 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 DNASE2O00115 360 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RAB36O95755 333 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SLC25A27O95847 323 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 IGKV1D-16P01601 117 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 TRBV12-3P01733 135 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RAP1AP62834 184 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CRADDP78560 199 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 C6orf99Q4VX62 202 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CLEC18BQ6UXF7 455 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 USP50Q70EL3 339 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SPICQ8N5J4 248 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RNF10Q8N5U6 811 aaKnown RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 OR4K17Q8NGC6 315 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 GHSRQ92847 366 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 METTL26Q96S19 204 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CHAC1Q9BUX1 264 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF426Q9BUY5 554 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 FBXL3Q9UKT7 428 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 ZC3H13Q5T200 1668 aaKnown RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CNTLNQ9NXG0 1405 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 STRCQ7RTU9 1775 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 IGLV11-55A0A075B6I3 123 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 IGKV1-27A0A075B6S5 117 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CRXO43186 299 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 MPZL2O60487 215 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SERPINB7O75635 380 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RP2O75695 350 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SLC25A14O95258 325 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 LY6G6DO95868 133 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 LIMS3P0CW19 117 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 LIMS4P0CW20 117 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 GTF2H1P32780 548 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 LHX2P50458 406 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CCR6P51684 374 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SHHQ15465 462 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 TMEM249Q2WGJ8 235 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 TMEM205Q6UW68 189 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 FAM92BQ6ZTR7 304 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 ZCCHC24Q8N2G6 241 aaKnown RBP3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CCNYL1Q8N7R7 359 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 OR6N1Q8NGY5 312 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 DCAKDQ8WVC6 231 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 PTX4Q96A99 478 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RSG1Q9BU20 258 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 EMC6Q9BV81 110 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 TOLLIPQ9H0E2 274 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 SLC40A1Q9NP59 571 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 CACNG2Q9Y698 323 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 RAD50Q92878 1312 aa3.24□□□□□ -1.89
VPS13A-212ENST00000493341 ADCY9O60503 1353 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 MTUS2Q5JR59 1369 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 CCNB3Q8WWL7 1395 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 MIA2Q96PC5 1412 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 CAMSAP2Q08AD1 1489 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 CLTCQ00610 1675 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 KIR2DS1A0A191URI9 304 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 MANBAO00462 879 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 PSPHP1O15172 72 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 NDUFS5O43920 106 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 DTYMKP23919 212 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 RHOAP61586 193 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 NAB1Q13506 487 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 TMEM255AQ5JRV8 349 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 KHDRBS2Q5VWX1 349 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 OR52P1PQ8NH57 321 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 UBA3Q8TBC4 463 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 WDR34Q96EX3 536 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 MRAP2Q96G30 205 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 SAMD10Q9BYL1 202 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 SLC25A39Q9BZJ4 359 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 METTL8Q9H825 291 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 EXOSC4Q9NPD3 245 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 TAS2R13Q9NYV9 303 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 NAGKQ9UJ70 344 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 MN1Q10571 1320 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 NPATQ14207 1427 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 TCOF1Q13428 1488 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 CCDC141Q6ZP82 1450 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 ARHGAP23Q9P227 1491 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 SHANK2Q9UPX8 1470 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 C2orf16Q68DN1 1984 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 DEPDC5O75140 1603 aa3.23□□□□□ -1.89
VPS13A-212ENST00000493341 DNMT1P26358 1616 aaKnown RBP3.23□□□□□ -1.89
VPS13A-212ENST00000493341 IGHV3-66A0A0C4DH42 116 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF233A6NK53 670 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 C11orf94C9JXX5 98 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 GOLGA8KD6RF30 607 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 GOLGA8MH3BSY2 632 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 J3QLI3 93 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 TCAPO15273 167 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 DHRS3O75911 302 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 SLC22A5O76082 557 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ATP6V1G2O95670 118 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 CGAP01215 116 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms