RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	HEXA-AS1	Q9H8Q6	139 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	TPT1P8	Q9HAU6	139 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	PATZ1	Q9HBE1	687 aa	Known RBP	4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	FGF20	Q9NP95	211 aa	Predicted RBP	4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	FGF21	Q9NSA1	209 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	SMPX	Q9UHP9	88 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	SLC17A4	Q9Y2C5	497 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	EXOSC1	Q9Y3B2	195 aa	Known RBP	4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	SPIN1	Q9Y657	262 aa	Predicted RBP	4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	ENPP4	Q9Y6X5	453 aa		4.07	□□□□□ -1.76
RTN4-215	ENST00000491592	CHD5	Q8TDI0	1954 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PTPRD	P23468	1912 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	GREB1	Q4ZG55	1949 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	NSG1	A0A0A6YYJ2	146 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FAM74A7	A6NL05	159 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	RNF212B	A8MTL3	300 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PRR32	B1ATL7	298 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ZNF732	B4DXR9	585 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FTCDNL1	E5RQL4	147 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592		H3BMH7	237 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FAAH	O00519	579 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CHST10	O43529	356 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SSNA1	O43805	119 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ENTPD6	O75354	484 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CEACAM4	O75871	244 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ATP5L	O75964	103 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TIMP1	P01033	207 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PDYN	P01213	254 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	HLA-DPB1	P04440	258 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ISG15	P05161	165 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	HBQ1	P09105	142 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ICAM2	P13598	275 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SDC1	P18827	310 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CEL	P19835	753 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	GNRHR	P30968	328 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TIMP3	P35625	211 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SOX3	P41225	446 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	NSG1	P42857	185 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	XCR1	P46094	333 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	GABRA4	P48169	554 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	HOXA1	P49639	335 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CAV2	P51636	162 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PDX1	P52945	283 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CRISP3	P54108	245 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	WNT4	P56705	351 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TAS2R60	P59551	318 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FAM3A	P98173	230 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	HMGCS1	Q01581	520 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	OC90	Q02509	493 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TLE4	Q04727	773 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	MFGE8	Q08431	387 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PUDP	Q08623	228 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	RAB40B	Q12829	278 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	GPR17	Q13304	367 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	KLF5	Q13887	457 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	GPNMB	Q14956	572 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FCN2	Q15485	313 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	RGN	Q15493	299 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ZNF630	Q2M218	657 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	FAM74A3	Q4VXF1	159 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	DMRTC1	Q5HYR2	192 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CPTP	Q5TA50	214 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ZNF57	Q68EA5	555 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	NOXRED1	Q6NXP6	359 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	BAIAP2L2	Q6UXY1	529 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	LANCL3	Q6ZV70	420 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TSEN54	Q7Z6J9	526 aa	Known RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	LYG2	Q86SG7	212 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TMEM25	Q86YD3	366 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	APOBEC3F	Q8IUX4	373 aa	Known RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ZNF547	Q8IVP9	402 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	C10orf111	Q8N326	155 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	EIF4E3	Q8N5X7	224 aa	Known RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	OR11L1	Q8NGX0	322 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	OR51A7	Q8NH64	312 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	THAP6	Q8TBB0	222 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	RNASEH2C	Q8TDP1	164 aa	Known RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SMAP2	Q8WU79	429 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	HPSE2	Q8WWQ2	592 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PNPLA2	Q96AD5	504 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	WDR34	Q96EX3	536 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SDSL	Q96GA7	329 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	AIF1L	Q9BQI0	150 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	DCTN5	Q9BTE1	182 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	COMMD4	Q9H0A8	199 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ALX4	Q9H161	411 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CXCL16	Q9H2A7	254 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	OR51J1	Q9H342	316 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CUTC	Q9NTM9	273 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ACER3	Q9NUN7	267 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	TEX10	Q9NXF1	929 aa	Predicted RBP	4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	BAIAP2	Q9UQB8	552 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	SCML2	Q9UQR0	700 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	ANGPT4	Q9Y264	503 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	KLHDC2	Q9Y2U9	406 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PRELID3B	Q9Y3B1	194 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	CACNA1I	Q9P0X4	2223 aa		4.06	□□□□□ -1.76
RTN4-215	ENST00000491592	PLXNB2	O15031	1838 aa		4.05	□□□□□ -1.76
RTN4-215	ENST00000491592	MEIKIN	A0A087WXM9	373 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms