RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SMARCD1Q96GM5 515 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ADTRPQ96IZ2 230 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ZNF75AQ96N20 296 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ZFP3Q96NJ6 502 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 FRMD8P1Q9BZ68 369 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 SND1-IT1Q9HBX3 110 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 CSNK1G1Q9HCP0 422 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 LZTFL1Q9NQ48 299 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 HEBP1Q9NRV9 189 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 NRBP2Q9NSY0 501 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 IFNKQ9P0W0 207 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 NDRG2Q9UN36 371 aaKnown RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PLXNB3Q9ULL4 1909 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ZSWIM8A7E2V4 1837 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 IGHV6-1A0A0B4J1U7 121 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 IGKV1-6A0A0C4DH72 117 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 LOC100506127A0A0U1RQW1 187 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 LINC00854A0A1B0GVQ3 168 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 A0A1B0GW15 77 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 MGAT4DA6NG13 374 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 ZNF98A6NK75 572 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 C16orf90A8MZG2 172 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 CENPBD1B2RD01 187 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 M0R1B8 84 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 CCDC22O60826 627 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 DHRS3O75911 302 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 PTHP01270 115 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 IGKV1-39P01597 117 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 IGKV1D-39P04432 117 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 RPN2P04844 631 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 CD28P10747 220 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 PRKACBP22694 351 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 IL3RAP26951 378 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 TAS2R43P59537 309 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 FUT5Q11128 374 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 GPR176Q14439 515 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 DMC1Q14565 340 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 Q3ZCU0 254 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 LUZP6Q538Z0 58 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 KLHL12Q53G59 568 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 HSP90AA4PQ58FG1 418 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 ACTL10Q5JWF8 245 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 MFSD14CQ5VZR4 134 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 DEGS2Q6QHC5 323 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 RBM45Q8IUH3 476 aaKnown RBP1.17□□□□□ -2.22
CPSF3-205ENST00000489629 STK40Q8N2I9 435 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 APCDD1LQ8NCL9 501 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 OR2Z1Q8NG97 314 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 OR6K6Q8NGW6 343 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 C19orf60Q96EN9 201 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 ZNF649Q9BS31 505 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 LINC00574Q9H8X3 128 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 PLEKHA1Q9HB21 404 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 ZNF302Q9NR11 478 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 TAS2R5Q9NYW4 299 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 CYB5R1Q9UHQ9 305 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 NXT1Q9UKK6 140 aaKnown RBP1.17□□□□□ -2.22
CPSF3-205ENST00000489629 STK38LQ9Y2H1 464 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 MYO16Q9Y6X6 1858 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 PRR14LQ5THK1 2151 aa1.17□□□□□ -2.22
CPSF3-205ENST00000489629 TRAV8-4A0A0B4J246 113 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 TRAV8-6A0A0B4J262 113 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 FAM240AA0A1B0GVK7 77 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ANKRD20A5PA0PJZ0 165 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 GOLGA8JA6NMD2 632 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CEACAM18A8MTB9 384 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SEC14L6B5MCN3 397 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ENSAO43768 121 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 UPK1BO75841 260 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 P01737 135 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 RHOCP08134 193 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SLC35G6P0C7Q6 338 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CCDC172P0C7W6 258 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 GOLGA8HP0CJ92 632 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 M6PRP20645 277 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 BGNP21810 368 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 DEKP35659 375 aaKnown RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ERFP50548 548 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 TNNC1P63316 161 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 IL5RAQ01344 420 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ST3GAL4Q11206 333 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 STK38Q15208 465 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 GUSBP1Q15486 140 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 TAF9Q16594 264 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SP6Q3SY56 376 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 MED27Q6P2C8 311 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 FAHD1Q6P587 224 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 PRSS54Q6PEW0 395 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SPINT4Q6UDR6 99 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 C16orf47Q6ZP98 133 aaPredicted RBP1.16□□□□□ -2.22
CPSF3-205ENST00000489629 Q6ZSR6 202 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 COPS6Q7L5N1 327 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SLC7A5P1Q8MH63 180 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 GAPTQ8N292 157 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 ATPAF2Q8N5M1 289 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 SLC25A29Q8N8R3 303 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 CDRT4Q8N9R6 151 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 OR2M7Q8NG81 312 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 OR4M2Q8NGB6 313 aa1.16□□□□□ -2.22
CPSF3-205ENST00000489629 LRRC20Q8TCA0 184 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms