RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEM175Q9BSA9 504 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 DEFB129Q9H1M3 183 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 CLSTN2Q9H4D0 955 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 VPS37BQ9H9H4 285 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 PRSS16Q9NQE7 514 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 ZC4H2Q9NQZ6 224 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 NRBP2Q9NSY0 501 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 MRPL22Q9NWU5 206 aaKnown RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 IL20Q9NYY1 176 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 ZNF492Q9P255 531 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 CES1P1Q9UKY3 287 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 RAB22AQ9UL26 194 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 DDX19BQ9UMR2 479 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 NDRG2Q9UN36 371 aaKnown RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 PRELID1Q9Y255 219 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 CFL2Q9Y281 166 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 PPIL1Q9Y3C6 166 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 CHTOPQ9Y3Y2 248 aaKnown RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 YLPM1P49750 1951 aaKnown RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 OTOFQ9HC10 1997 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 KIF1BO60333 1816 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 MAP2P11137 1827 aaKnown RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 ECM29Q5VYK3 1845 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 KIF1AQ12756 1690 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 SVILO95425 2214 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 IBTKQ9P2D0 1353 aaPredicted RBP0.93□□□□□ -2.26
SMC4-220ENST00000488017 MYH4Q9Y623 1939 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 WDR97A6NE52 1622 aa0.93□□□□□ -2.26
SMC4-220ENST00000488017 POLR1AO95602 1720 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 LRRIQ1Q96JM4 1722 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TTC41PQ6P2S7 1318 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 WDR19Q8NEZ3 1342 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 KIF13AQ9H1H9 1805 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 MYO5BQ9ULV0 1848 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ERBINQ96RT1 1412 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 KIAA1107Q9UPP5 1409 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ARPC4-TTLL3A0A0A6YYG9 625 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 IGHV6-1A0A0B4J1U7 121 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TMEM72A0PK05 275 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ZNF99A8MXY4 864 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 HACD1B0YJ81 288 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 C4orf51C9J302 202 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 J3QKU1 62 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 AKR7A2O43488 359 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 OR5F1O95221 314 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 FARS2O95363 451 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 NPPAP01160 153 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 PTHP01270 115 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 S100A6P06703 90 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 INAFM2P0DMQ5 153 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TUBG1P23258 451 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 CD82P27701 267 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 HLA-DMAP28067 261 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 MPIP34949 423 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TGM4P49221 684 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TUFMP49411 452 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 ETV1P50549 477 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 PSMD7P51665 324 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ARPC4P59998 168 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 DSTNP60981 165 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 POLR2GP62487 172 aaKnown RBP eCLIP0.92□□□□□ -2.26
SMC4-220ENST00000488017 PAFAH1B2P68402 229 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 BASP1P80723 227 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 KDSRQ06136 332 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 DNAJC3Q13217 504 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 SPCS2Q15005 226 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 HADHQ16836 314 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 C5orf64Q2M2E5 130 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 THOC7Q6I9Y2 204 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 MORN3Q6PF18 240 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 WDR59Q6PJI9 974 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 SMARCD3Q6STE5 483 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 SPATA24Q86W54 205 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 PDPNQ86YL7 162 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 CMTM8Q8IZV2 173 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ZCCHC24Q8N2G6 241 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 SLC26A10Q8NG04 563 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 OR2M7Q8NG81 312 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 OR8K1Q8NGG5 319 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ZNF420Q8TAQ5 688 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 PEX13Q92968 403 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 RBPMSQ93062 196 aaKnown RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 SNF8Q96H20 258 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 Q96MT0 163 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 CSPG4P5Q96PW8 444 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 DERL3Q96Q80 235 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 PDCD1LG2Q9BQ51 273 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 MTG1Q9BT17 334 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 VCX3BQ9H321 246 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 NCOR1P1Q9H4R4 102 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 C8orf33Q9H7E9 229 aaPredicted RBP0.92□□□□□ -2.26
SMC4-220ENST00000488017 VSIRQ9H7M9 311 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 PARVGQ9HBI0 331 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 SND1-IT1Q9HBX3 110 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ZNF302Q9NR11 478 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 TUBG2Q9NRH3 451 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 SDHAF3Q9NRP4 125 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 FKBP14Q9NWM8 211 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 ADA2Q9NZK5 511 aa0.92□□□□□ -2.26
SMC4-220ENST00000488017 VAX2Q9UIW0 290 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms