RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CADM1Q9BY67 442 aaKnown RBP17.61■□□□□ 0.41
USP40-215ENST00000484528 ADGRL4Q9HBW9 690 aa17.61■□□□□ 0.41
USP40-215ENST00000484528 TCF7L1Q9HCS4 588 aa17.61■□□□□ 0.41
USP40-215ENST00000484528 KRT84Q9NSB2 600 aa17.61■□□□□ 0.41
USP40-215ENST00000484528 TRBV23-1A0A0A0MS06 115 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 RFPL4AA6NLU0 287 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 RFPL4AL1F8VTS6 287 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 TIMM23O14925 209 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 PAX6P26367 422 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 HAAOP46952 286 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 SMIM21Q3B7S5 101 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 ZBTB37Q5TC79 503 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 POC1AQ8NBT0 407 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 IL4I1Q96RQ9 567 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 RBM4BQ9BQ04 359 aaKnown RBP17.6■□□□□ 0.41
USP40-215ENST00000484528 PRRG3Q9BZD7 231 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 PPA2Q9H2U2 334 aa17.6■□□□□ 0.41
USP40-215ENST00000484528 DSCAML1Q8TD84 2053 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 TET2Q6N021 2002 aaPredicted RBP17.59■□□□□ 0.41
USP40-215ENST00000484528 H3BSH0 61 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 H3BUX3 64 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 J3QT63 122 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 MTRF1O75570 445 aaKnown RBP17.59■□□□□ 0.41
USP40-215ENST00000484528 PDLIM3Q53GG5 364 aaPredicted RBP17.59■□□□□ 0.41
USP40-215ENST00000484528 AADACL4Q5VUY2 407 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 SLX4IPQ5VYV7 408 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 ASRGL1Q7L266 308 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 TMEM163Q8TC26 289 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 RORBQ92753 470 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 TBX5Q99593 518 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 H2AFY2Q9P0M6 372 aaPredicted RBP17.59■□□□□ 0.41
USP40-215ENST00000484528 MRM2Q9UI43 246 aaKnown RBP17.59■□□□□ 0.41
USP40-215ENST00000484528 OR52A1Q9UKL2 312 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 R4GMQ9 66 aa17.59■□□□□ 0.41
USP40-215ENST00000484528 ANKRD61A6NGH8 418 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 SLC22A31A6NKX4 558 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 ZNF670-ZNF695F2Z2N8 137 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 RPP14O95059 124 aaKnown RBP17.58■□□□□ 0.4
USP40-215ENST00000484528 TSPAN15O95858 294 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 PGA5P0DJD9 388 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 EGR3Q06889 387 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 ACSM1Q08AH1 577 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 LY6EQ16553 131 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 CLVS2Q5SYC1 327 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 NXNL2Q5VZ03 156 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 MKXQ8IYA7 352 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 ELMOD2Q8IZ81 293 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 OR4M1Q8NGD0 313 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 OR5D13Q8NGL4 314 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 OR5R1Q8NH85 324 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 UBE2FQ969M7 185 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 MMP27Q9H306 513 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 C16orf95Q9H693 158 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 MOB1AQ9H8S9 216 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 RASL12Q9NYN1 266 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 OR14J1Q9UGF5 321 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 SLC22A13Q9Y226 551 aa17.58■□□□□ 0.4
USP40-215ENST00000484528 SF3B6Q9Y3B4 125 aaKnown RBP17.58■□□□□ 0.4
USP40-215ENST00000484528 A0A1B0GTI1 187 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 ZAR1LA6NP61 321 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 NXPH2O95156 264 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 PRDX2P32119 198 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 TGFBR2P37173 567 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 RPL31P62899 125 aaKnown RBP17.57■□□□□ 0.4
USP40-215ENST00000484528 ATP6AP1Q15904 470 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 ODF4Q2M2E3 257 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 C12orf73Q69YU5 71 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 SSX6Q7RTT6 188 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 ZNF573Q86YE8 665 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 BEND2Q8NDZ0 799 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 OR51G2Q8NGK0 314 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 OR14K1Q8NGZ2 314 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 TRMT10AQ8TBZ6 339 aaKnown RBP17.57■□□□□ 0.4
USP40-215ENST00000484528 ITFG2Q969R8 447 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 CLN6Q9NWW5 311 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 V9GYS6 101 aa17.57■□□□□ 0.4
USP40-215ENST00000484528 PQLC2LA1A4F0 135 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 G3V2T6 193 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 SLC1A7O00341 560 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 TSPAN9O75954 239 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 APOL3O95236 402 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 CCL3L1P16619 93 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 COX7A1P24310 79 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 ERVFRD-1P60508 538 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 EFNB1P98172 346 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 TMEM42Q69YG0 159 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 SLC35E4Q6ICL7 350 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 AMIGO2Q86SJ2 522 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 ANGPTL5Q86XS5 388 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 AJUBAQ96IF1 538 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 SSX3Q99909 188 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 NRIP2Q9BQI9 281 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 SIGLEC9Q9Y336 463 aa17.56■□□□□ 0.4
USP40-215ENST00000484528 PIPP12273 146 aaPredicted RBP17.55■□□□□ 0.4
USP40-215ENST00000484528 ACTR3P61158 418 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 OCLNQ16625 522 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 TMEM200BQ69YZ2 307 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 KDM4DQ6B0I6 523 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 CALHM1Q8IU99 346 aa17.55■□□□□ 0.4
USP40-215ENST00000484528 ZNF561Q8N587 486 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms