RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 H3F3AP84243 136 aa12□□□□□ -0.49
USP42-206ENST00000479544 ZNF345Q14585 488 aa12□□□□□ -0.49
USP42-206ENST00000479544 CNN3Q15417 329 aaKnown RBP12□□□□□ -0.49
USP42-206ENST00000479544 CT45A2Q5DJT8 189 aa12□□□□□ -0.49
USP42-206ENST00000479544 ZNF787Q6DD87 383 aa12□□□□□ -0.49
USP42-206ENST00000479544 LANCL3Q6ZV70 420 aa12□□□□□ -0.49
USP42-206ENST00000479544 BAGE3Q86Y29 109 aa12□□□□□ -0.49
USP42-206ENST00000479544 BAGE2Q86Y30 109 aa12□□□□□ -0.49
USP42-206ENST00000479544 HIST1H2BAQ96A08 127 aa12□□□□□ -0.49
USP42-206ENST00000479544 MSL2Q9HCI7 577 aa12□□□□□ -0.49
USP42-206ENST00000479544 NPTNQ9Y639 398 aa12□□□□□ -0.49
USP42-206ENST00000479544 WNK2Q9Y3S1 2297 aa12□□□□□ -0.49
USP42-206ENST00000479544 C9J4A7 227 aa12□□□□□ -0.49
USP42-206ENST00000479544 M0R135 149 aa12□□□□□ -0.49
USP42-206ENST00000479544 TUSC2O75896 110 aa12□□□□□ -0.49
USP42-206ENST00000479544 MBP02144 154 aa12□□□□□ -0.49
USP42-206ENST00000479544 CARD18P57730 90 aa12□□□□□ -0.49
USP42-206ENST00000479544 OR1D5P58170 312 aa12□□□□□ -0.49
USP42-206ENST00000479544 TFF2Q03403 129 aa12□□□□□ -0.49
USP42-206ENST00000479544 FOXF1Q12946 379 aa12□□□□□ -0.49
USP42-206ENST00000479544 SLC16A14Q7RTX9 510 aa12□□□□□ -0.49
USP42-206ENST00000479544 ZNF799Q96GE5 643 aa12□□□□□ -0.49
USP42-206ENST00000479544 GPHA2Q96T91 129 aa12□□□□□ -0.49
USP42-206ENST00000479544 RCC2Q9P258 522 aaKnown RBP12□□□□□ -0.49
USP42-206ENST00000479544 CACNA1HO95180 2353 aa12□□□□□ -0.49
USP42-206ENST00000479544 CXorf51AA0A1B0GTR3 108 aa12□□□□□ -0.49
USP42-206ENST00000479544 RNF222A6NCQ9 220 aa12□□□□□ -0.49
USP42-206ENST00000479544 ACER2Q5QJU3 275 aa12□□□□□ -0.49
USP42-206ENST00000479544 ZNF880Q6PDB4 577 aa12□□□□□ -0.49
USP42-206ENST00000479544 LIPHQ8WWY8 451 aa12□□□□□ -0.49
USP42-206ENST00000479544 PSMF1Q92530 271 aa12□□□□□ -0.49
USP42-206ENST00000479544 FAM234AQ9H0X4 552 aa12□□□□□ -0.49
USP42-206ENST00000479544 DFFBO76075 338 aa12□□□□□ -0.49
USP42-206ENST00000479544 PATE4P0C8F1 98 aa12□□□□□ -0.49
USP42-206ENST00000479544 DCAF7P61962 342 aa12□□□□□ -0.49
USP42-206ENST00000479544 ATG4DQ86TL0 474 aaPredicted RBP12□□□□□ -0.49
USP42-206ENST00000479544 SLC26A10Q8NG04 563 aa12□□□□□ -0.49
USP42-206ENST00000479544 OR4F5Q8NH21 305 aa12□□□□□ -0.49
USP42-206ENST00000479544 ZNF764Q96H86 408 aaPredicted RBP12□□□□□ -0.49
USP42-206ENST00000479544 OR4F4Q96R69 305 aa12□□□□□ -0.49
USP42-206ENST00000479544 ST3GAL6Q9Y274 331 aa12□□□□□ -0.49
USP42-206ENST00000479544 DOCK4Q8N1I0 1966 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 MFNGO00587 321 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 EIF4E2O60573 245 aaKnown RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 SLC25A4P12235 298 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 DRD1P21728 446 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 BAXQ07812 192 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 MPV17LQ2QL34 196 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 LINC01590Q5TEZ4 76 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 UNQ9370/PRO34162Q6UXP9 181 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 GJC3Q8NFK1 279 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 MRPS17Q9Y2R5 130 aaKnown RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 STRAPQ9Y3F4 350 aaKnown RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 CDC14BO60729 498 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 TRGC2P03986 189 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 AADACP22760 399 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 EFNB1P98172 346 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 WDR5BQ86VZ2 330 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 AURKAIP1Q9NWT8 199 aaPredicted RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 C19orf25Q9UFG5 118 aaPredicted RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 DOCK9Q9BZ29 2069 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 PLXNA1Q9UIW2 1896 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 DVL1O14640 695 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 ERVS71-1P61550 626 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 DLK1P80370 383 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 HTD2P86397 168 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 ZXDAP98168 799 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 INSM1Q01101 510 aaPredicted RBP11.99□□□□□ -0.49
USP42-206ENST00000479544 RUNX1Q01196 453 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 ZNF343Q6P1L6 599 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 SLC25A26Q70HW3 274 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 OR51M1Q9H341 326 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 TTC28Q96AY4 2481 aa11.99□□□□□ -0.49
USP42-206ENST00000479544 H3BQ15 152 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 TCAPO15273 167 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 NDUFS6O75380 124 aaKnown RBP11.98□□□□□ -0.49
USP42-206ENST00000479544 MOSPD3O75425 235 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 HEXAP06865 529 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 RSPO4Q2I0M5 234 aaPredicted RBP11.98□□□□□ -0.49
USP42-206ENST00000479544 FGF14Q92915 247 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 MRGPRX1Q96LB2 322 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 FAM103A1Q9BTL3 118 aaKnown RBP11.98□□□□□ -0.49
USP42-206ENST00000479544 LHX6Q9UPM6 363 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 PPP1R3CQ9UQK1 317 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 RBP2P50120 134 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 UBE2G2P60604 165 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 YPEL5P62699 121 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 ZNF141Q15928 474 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 TXN2Q99757 166 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 RARRES3Q9UL19 164 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 A0A1W2PNV4 684 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 TRAPPC2LH3BP13 241 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 FBP1P09467 338 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 ANKRD55Q3KP44 614 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 OR5AS1Q8N127 324 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 PACRGQ96M98 296 aaPredicted RBP11.98□□□□□ -0.49
USP42-206ENST00000479544 NMES1Q9C002 83 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 CA14Q9ULX7 337 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 ICAM5Q9UMF0 924 aa11.98□□□□□ -0.49
USP42-206ENST00000479544 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms