RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR2F1Q13607 317 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 PNLIPRP3Q17RR3 467 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 C6orf15Q6UXA7 325 aaPredicted RBP16.61■□□□□ 0.25
VIM-203ENST00000469543 SLC16A14Q7RTX9 510 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 LHFPL1Q86WI0 220 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 GPR137CQ8N3F9 429 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 FOXB1Q99853 325 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 PPA2Q9H2U2 334 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 METTL8Q9H825 291 aaKnown RBP16.61■□□□□ 0.25
VIM-203ENST00000469543 RASL12Q9NYN1 266 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 LRFN1Q9P244 771 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 SHPKQ9UHJ6 478 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 OSGIN2Q9Y236 505 aa16.61■□□□□ 0.25
VIM-203ENST00000469543 FIGNL2A6NMB9 653 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 SFTPBP07988 381 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 UBBP0CG47 229 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 ZP3P21754 424 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 RPUSD3Q6P087 351 aaKnown RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 CPEB3Q8NE35 698 aaKnown RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 BARX1Q9HBU1 254 aaPredicted RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 LOC105371267A0A1B0GV96 52 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 GEMIN2O14893 280 aaKnown RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 SFT2D2O95562 160 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 RPS2P15880 293 aaKnown RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 FOXO1Q12778 655 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 ADGRG7Q96K78 797 aa16.6■□□□□ 0.25
VIM-203ENST00000469543 ZNF2Q9BSG1 426 aaPredicted RBP16.6■□□□□ 0.25
VIM-203ENST00000469543 CACNA1HO95180 2353 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 C9orf172C9J069 976 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 C3orf80F5H4A9 247 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 ALDH3B1P43353 468 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 ZNF345Q14585 488 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 RSU1Q15404 277 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 OR52H1Q8NGJ2 320 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 ASB13Q8WXK3 278 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 WNT2BQ93097 391 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 MRPS24Q96EL2 167 aaKnown RBP16.59■□□□□ 0.25
VIM-203ENST00000469543 GJE1A6NN92 205 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 APOC3P02656 99 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 CPT2P23786 658 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 TSPO2Q5TGU0 170 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 PEG10Q86TG7 708 aaKnown RBP16.59■□□□□ 0.25
VIM-203ENST00000469543 ZBTB44Q8NCP5 570 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 TMEM185AQ8NFB2 350 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 OR2V1Q8NHB1 315 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 Q96M66 194 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 CDC6Q99741 560 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 SF3B5Q9BWJ5 86 aaKnown RBP16.59■□□□□ 0.25
VIM-203ENST00000469543 WNT5BQ9H1J7 359 aa16.59■□□□□ 0.25
VIM-203ENST00000469543 LNP1A1A4G5 178 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 SNAPC5O75971 98 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 CSTBP04080 98 aaKnown RBP16.58■□□□□ 0.25
VIM-203ENST00000469543 RAB32Q13637 225 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 RAB35Q15286 201 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 SULT4A1Q9BR01 284 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 TAS2R3Q9NYW6 316 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 AK3Q9UIJ7 227 aa16.58■□□□□ 0.25
VIM-203ENST00000469543 FAM166BA8MTA8 275 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 JMJD7P0C870 316 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 UBA52P62987 128 aaKnown RBP16.58■□□□□ 0.24
VIM-203ENST00000469543 RIPPLY1Q0D2K3 151 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 SP6Q3SY56 376 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 LINC00696Q6ZRV3 163 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 PIGCQ92535 297 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 TM2D1Q9BX74 207 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 OR2H1Q9GZK4 316 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 SHARPINQ9H0F6 387 aa16.58■□□□□ 0.24
VIM-203ENST00000469543 ZNF629Q9UEG4 869 aaPredicted RBP16.58■□□□□ 0.24
VIM-203ENST00000469543 M6PRP20645 277 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 ACP1P24666 158 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 FPR2P25090 351 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 PTGER4P35408 488 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 SSPNQ14714 243 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 C3AR1Q16581 482 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 MOB3CQ70IA8 216 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 CALHM1Q8IU99 346 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 MARS2Q96GW9 593 aaKnown RBP16.57■□□□□ 0.24
VIM-203ENST00000469543 GPR35Q9HC97 309 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 CRIM1Q9NZV1 1036 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 CEACAM18A8MTB9 384 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 NRASP01111 189 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 GFRA1P56159 465 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 FAM3AP98173 230 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 SNTB1Q13884 538 aaKnown RBP16.57■□□□□ 0.24
VIM-203ENST00000469543 FBXL14Q8N1E6 418 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 EMG1Q92979 244 aaKnown RBP16.57■□□□□ 0.24
VIM-203ENST00000469543 TOMM40LQ969M1 308 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 INTS12Q96CB8 462 aaKnown RBP16.57■□□□□ 0.24
VIM-203ENST00000469543 IER2Q9BTL4 223 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 OR2S2Q9NQN1 319 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 MED9Q9NWA0 146 aa16.57■□□□□ 0.24
VIM-203ENST00000469543 OR6C6A6NF89 314 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 SERPINE3A8MV23 424 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 B4E171 279 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 NEURL1O76050 574 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 MPLP40238 635 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 TSPAN7P41732 249 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 TAS2R31P59538 309 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 SULF2Q8IWU5 870 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 OR1S2Q8NGQ3 325 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms