RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KRTDAPP60985 99 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 OR2C3Q8N628 320 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 APOBEC3DQ96AK3 386 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 GHITMQ9H3K2 345 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 FBXO34Q9NWN3 711 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 WBP1LQ9NX94 342 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 FRRS1LQ9P0K9 344 aa16.95■□□□□ 0.3
CCDC88B-204ENST00000463837 MED19A0JLT2 244 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 PLPP3O14495 311 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 ONECUT2O95948 504 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 SLC37A1P57057 533 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 UBE2G2P60604 165 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 MYBPHQ13203 477 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 VAMP3Q15836 100 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 FAM210BQ96KR6 192 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 RP1L1Q8IWN7 2480 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 CTRB1P17538 263 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 RPL7L1Q6DKI1 246 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 CTRB2Q6GPI1 263 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 LYPD8Q6UX82 237 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 ADGRG7Q96K78 797 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 AQP7P3A6NL99 342 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM11P17152 192 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM241Q24JQ0 296 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 ZNF770Q6IQ21 691 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 Q8IYB0 196 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 CTDSP1Q9GZU7 261 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 PRO1933Q9H354 126 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 CXCL13O43927 109 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 BPIFB3P59826 476 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 RTL8BQ17RB0 113 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 ZNF66Q6ZN08 573 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 MARVELD3Q96A59 401 aa16.94■□□□□ 0.3
CCDC88B-204ENST00000463837 C3orf85A0A1B0GTC6 90 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 CYC1P08574 325 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 CD200P41217 278 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TCTN1Q2MV58 587 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM215Q68D42 235 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ETFBKMTQ8IXQ9 262 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM37Q8WXS4 190 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 A0A096LPE4 126 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 A0A1W2PPZ6 126 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 C2CD4DB7Z1M9 353 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 LINC01387J3KSC0 135 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM33P57088 247 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ZNF707Q96C28 371 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 OR4C45A6NMZ5 311 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ZNF891A8MT65 544 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 METTL12A8MUP2 240 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 GGTLC2Q14390 218 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 H1FXQ92522 213 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 CLDN23Q96B33 292 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 RSRP1Q9BUV0 290 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 MS4A7Q9GZW8 240 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ARL2-SNX15V9GYD0 113 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 B4DEV8 164 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 LANCL1O43813 399 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ADH4P08319 380 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 IGSF11Q5DX21 431 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 C9orf50Q5SZB4 431 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 SLC24A4Q8NFF2 622 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 FLRT3Q9NZU0 649 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TRAPPC1Q9Y5R8 145 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 NAT2P11245 290 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 CD81P60033 236 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 HLA-DRB3P79483 266 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 FMODQ06828 376 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 TMEM65Q6PI78 240 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ADPRHL1Q8NDY3 354 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 OR5C1Q8NGR4 320 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 OR2V1Q8NHB1 315 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 ST6GALNAC2Q9UJ37 374 aa16.93■□□□□ 0.3
CCDC88B-204ENST00000463837 CHEK1O14757 476 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 TNFSF11O14788 317 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 OPN1MWP04001 364 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 OPN1MW2P0DN77 364 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 OPN1MW3P0DN78 364 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 B4GALT1P15291 398 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 GALNSP34059 522 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 CBLN2Q8IUK8 224 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 ARRDC1-AS1Q9H2J1 176 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 UBE2L5PA0A1B0GUS4 154 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 MFNGO00587 321 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 GALR1P47211 349 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 IL24Q13007 206 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 CARFQ8N187 725 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 MRPS24Q96EL2 167 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 LYRM2Q9NU23 88 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 ABCD4O14678 606 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 AWAT1Q58HT5 328 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 ATG4DQ86TL0 474 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 PTX4Q96A99 478 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 GALMQ96C23 342 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 FOXB1Q99853 325 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 VAMP8Q9BV40 100 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 A0A1W2PQD3 144 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 RBFOX3A6NFN3 312 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 OR7C2O60412 319 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 TNFSF15O95150 251 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms