RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 OR4Q3Q8NH05 313 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 OR8S1Q8NH09 359 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 TMIGD2Q96BF3 282 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 FAM71F1Q96KD3 344 aaPredicted RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 PCGF1Q9BSM1 259 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 REEP1Q9H902 201 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 RNPEPL1Q9HAU8 725 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 C1orf123Q9NWV4 160 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 KAAG1Q9UBP8 84 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 SOX21Q9Y651 276 aaPredicted RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 POMT1Q9Y6A1 747 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 CENPVL3A0A0U1RRI6 287 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 hCG_1807616A0A1W2PRN6 198 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 DHRS12A0PJE2 317 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 RIIAD1A6NNX1 92 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 TIPRLO75663 272 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SCGB1D2O95969 90 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 GYPAP02724 150 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 CRYBA1P05813 215 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SFTPBP07988 381 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 CLUP10909 449 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SLC2A1P11166 492 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 MUC1P15941 1255 aaPredicted RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 MDKP21741 143 aaPredicted RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 HSD11B1P28845 292 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 CX3CR1P49238 355 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 RPL15P61313 204 aaKnown RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 FAM3AP98173 230 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 PPP1R8Q12972 351 aaKnown RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 EIF2B1Q14232 305 aaKnown RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 SNCBQ16143 134 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 TIGD6Q17RP2 521 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 FAM98BQ52LJ0 330 aaKnown RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 C10orf25Q5T742 122 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 METTL11BQ5VVY1 283 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 ZNF826PQ6ZT77 177 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SHFQ7M4L6 423 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SLC16A9Q7RTY1 509 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 DHFR2Q86XF0 187 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 FTMTQ8N4E7 242 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 OR52H1Q8NGJ2 320 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 OR6K6Q8NGW6 343 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 RNF133Q8WVZ7 376 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SGK3Q96BR1 496 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 REEP6Q96HR9 211 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 WDFY2Q96P53 400 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 TBX15Q96SF7 602 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 INTS14Q96SY0 518 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SIRPDQ9H106 197 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 RGCCQ9H4X1 137 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 MARCH7Q9H992 704 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 BEX1Q9HBH7 125 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 CMC2Q9NRP2 79 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 ACOXLQ9NUZ1 547 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 ARMC1Q9NVT9 282 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 SAMHD1Q9Y3Z3 626 aaKnown RBP5.97□□□□□ -1.45
USP54-208ENST00000461520 N6AMT1Q9Y5N5 214 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 U3KQV3 271 aa5.97□□□□□ -1.45
USP54-208ENST00000461520 hCG_38984A0A1B0GV85 526 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 ARRDC5A6NEK1 342 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 H3BN98 237 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 DVL1O14640 695 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 GLCEO94923 617 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 SOX14O95416 240 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 ANXA2P07355 339 aaKnown RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 MELTFP08582 738 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 GNALP38405 381 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 NAA10P41227 235 aaPredicted RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 ZNF121P58317 390 aaPredicted RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 ARF6P62330 175 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 MICBQ29980 383 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 CDONQ4KMG0 1287 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 MIDNQ504T8 468 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 RUSC1-AS1Q66K80 236 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 FIP1L1Q6UN15 594 aaKnown RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 BTN2A1Q7KYR7 527 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 PRSS45Q7RTY3 260 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 SLC36A1Q7Z2H8 476 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 DPY19L4Q7Z388 723 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 WDR86Q86TI4 376 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 ERI1Q8IV48 349 aaKnown RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 C11orf53Q8IXP5 236 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 CSNK2A3Q8NEV1 391 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 OR1M1Q8NGA1 313 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 OR10G2Q8NGC3 310 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 OR6N2Q8NGY6 317 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 OR4F5Q8NH21 305 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 TEX47Q8TBZ9 253 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 SSMEM1Q8WWF3 244 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 C12orf43Q96C57 262 aaKnown RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 ASB9Q96DX5 294 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 NSL1Q96IY1 281 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 NIPSNAP1Q9BPW8 284 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 ABHD6Q9BV23 337 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 TLNRD1Q9H1K6 362 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 ABCB9Q9NP78 766 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 VNN3Q9NY84 501 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 PRPF19Q9UMS4 504 aaKnown RBP5.96□□□□□ -1.46
USP54-208ENST00000461520 KPTNQ9Y664 436 aa5.96□□□□□ -1.46
USP54-208ENST00000461520 NOTCH1P46531 2555 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms