RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CA14Q9ULX7 337 aa10.29□□□□□ -0.76
CPSF3-202ENST00000460593 POLR1DQ9Y2S0 133 aa10.29□□□□□ -0.76
CPSF3-202ENST00000460593 BORCS7-ASMTA0A0B4J1R7 106 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IGKV1-9A0A0C4DH69 117 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 FAM24AA6NFZ4 105 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ARGFXA6NJG6 315 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 NPIPA5E9PKD4 350 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IFNL4K9M1U5 179 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 HSD17B6O14756 317 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 TCAPO15273 167 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IL33O95760 270 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IFNA21P01568 189 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 GSTP1P09211 210 aaKnown RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IL2RGP31785 369 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 PLA2G5P39877 138 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 P2RY1P47900 373 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 PIGPP57054 158 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR8G1Q15617 311 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OGFOD3Q6PK18 319 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF429Q86V71 674 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 LRP11Q86VZ4 500 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 SGPP2Q8IWX5 399 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR11L1Q8NGX0 322 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 EMG1Q92979 244 aaKnown RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 S100A13Q99584 98 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 NPIPA1Q9UND3 350 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 RBFOX3A6NFN3 312 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 CEACAM18A8MTB9 384 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 H3BML4 177 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 MSTNO14793 375 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 EREGO14944 169 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 DXOO77932 396 aaKnown RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ADH1BP00325 375 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 CHRM2P08172 466 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 SEC11BP0C7V7 166 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 FCARP24071 287 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR1D4P47884 311 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 UCP2P55851 309 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 RUNX1Q01196 453 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 CHAF1BQ13112 559 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 CLEC12BQ2HXU8 276 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 DBX2Q6ZNG2 339 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR8B12Q8NGG6 310 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 RNF133Q8WVZ7 376 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 TBL1XR1Q9BZK7 514 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR10A2Q9H208 303 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 PRUNE2Q8WUY3 3088 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 FIGNL2A6NMB9 653 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 TSTD3H0UI37 97 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 MS4A18H0YCH9 400 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 PLRG1O43660 514 aaKnown RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 SCAF4O95104 1147 aaKnown RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 TMEM225BP0DP42 221 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF17P17021 662 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 COL9A1P20849 921 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 IL12BP29460 328 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 MMP16P51512 607 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 PKIAP61925 76 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 RAB1AP62820 205 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 MS4A18Q3C1V0 323 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF776Q68DI1 518 aaPredicted RBP10.28□□□□□ -0.76
CPSF3-202ENST00000460593 OR2G3Q8NGZ4 309 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 KCNG3Q8TAE7 436 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 SHDQ96IW2 340 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 MAGT1Q9H0U3 335 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 VDAC3Q9Y277 283 aa10.28□□□□□ -0.76
CPSF3-202ENST00000460593 ZNF705GA8MUZ8 300 aaPredicted RBP10.27□□□□□ -0.77
CPSF3-202ENST00000460593 STMND1H3BQB6 276 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 RER1O15258 196 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 AHSA1O95433 338 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 AFF3P51826 1226 aaKnown RBP10.27□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF880Q6PDB4 577 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 MEX3BQ6ZN04 569 aaKnown RBP10.27□□□□□ -0.77
CPSF3-202ENST00000460593 FAM57BQ71RH2 274 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 C5orf24Q7Z6I8 188 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM123Q8N131 208 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 STT3BQ8TCJ2 826 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 SCGB3A2Q96PL1 93 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 GINS3Q9BRX5 216 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 K7N7A8 449 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 BCAT2O15382 392 aaPredicted RBP10.27□□□□□ -0.77
CPSF3-202ENST00000460593 DBHP09172 617 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 NR2C1P13056 603 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 MMP9P14780 707 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 BIDP55957 195 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF121P58317 390 aaPredicted RBP10.27□□□□□ -0.77
CPSF3-202ENST00000460593 RUNX3Q13761 415 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 PDCD1Q15116 288 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 AKR1C8PQ5T2L2 129 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 SPSB3Q6PJ21 355 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 OOSP2Q86WS3 158 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 BATF2Q8N1L9 274 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 ARHGEF39Q8N4T4 335 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM217Q8N7C4 229 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 PIGTQ969N2 578 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 C5orf34Q96MH7 638 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 HIST1H2BLQ99880 126 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 PECRQ9BY49 303 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 ARV1Q9H2C2 271 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 TUBD1Q9UJT1 453 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms