RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SLC39A8Q9C0K1 460 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LPAR5Q9H1C0 372 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 TXNIPQ9H3M7 391 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 FAM124BQ9H5Z6 455 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 RALYQ9UKM9 306 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 SIGLEC9Q9Y336 463 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 DENND4AQ7Z401 1863 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 MYO15AQ9UKN7 3530 aa4.18□□□□□ -1.74
CCDC88A-209ENST00000456975 LOC102724200A0A096LPH7 203 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 GLYATL1P3A0A0U1RQE8 302 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1W2PRE2 83 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 RNF212BA8MTL3 300 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 C15orf65H3BRN8 121 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 PLPP3O14495 311 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 TNFSF11O14788 317 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CASKO14936 926 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 MPZL2O60487 215 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 C1RP00736 705 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 HLA-HP01893 362 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CT62P0C5K7 136 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 C8orf88P0DMB2 117 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ESDP10768 282 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CHRNB2P17787 502 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 FBLP22087 321 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 TFPI2P48307 235 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 NDUFA8P51970 172 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 AKR1C2P52895 323 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SRSF4Q08170 494 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 HLA-BQ31612 363 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CPTPQ5TA50 214 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 XAF1Q6GPH4 301 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ANKRD16Q6P6B7 361 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 LCTLQ6UWM7 567 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 FBXW12Q6X9E4 464 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC30A8Q8IWU4 369 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 D2HGDHQ8N465 521 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 PNPLA1Q8N8W4 532 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 B3GALNT2Q8NCR0 500 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SMRP1Q8NCR6 262 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 MCFD2Q8NI22 146 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 RNF138Q8WVD3 245 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SKA2Q8WVK7 121 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CANT1Q8WVQ1 401 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 MSI2Q96DH6 328 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SMIM19Q96E16 107 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 LRRC3BQ96PB8 259 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 GFM1Q96RP9 751 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ACOX2Q99424 681 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SEPHS2Q99611 448 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ARL6Q9H0F7 186 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC25A51Q9H1U9 297 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SYT4Q9H2B2 425 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 TUBA4BQ9H853 241 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SFXN1Q9H9B4 322 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CLN6Q9NWW5 311 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 COX11Q9Y6N1 276 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 GVINP1Q7Z2Y8 2422 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CENPVL1A0A0U1RR11 272 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CENPVL3A0A0U1RRI6 287 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF724A8MTY0 619 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF814B7Z6K7 855 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 K7ERI5 159 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CHST1O43916 411 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 SCGNO76038 276 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 HPNP05981 417 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 UNGP13051 313 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF17P17021 662 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 HOXB9P17482 250 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 PI3P19957 117 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ALOX5APP20292 161 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 IDSP22304 550 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CHATP28329 748 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 FOXG1P55316 489 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 S100A10P60903 97 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 TRAF3Q13114 568 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 MAD2L1BPQ15013 274 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 KHDC3LQ587J8 217 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 CLLU1OSQ5K130 101 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 XP32Q5T750 250 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 HECTD2Q5U5R9 776 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 FRRS1Q6ZNA5 592 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 DTX2Q86UW9 622 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 KLHDC8BQ8IXV7 354 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF567Q8N184 647 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 NOXO1Q8NFA2 376 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ARL11Q969Q4 196 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM159Q96B96 161 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 PYCR2Q96C36 320 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 C10orf35Q96D05 121 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 KCTD7Q96MP8 289 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ERMAPQ96PL5 475 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ADAT1Q9BUB4 502 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 RDH14Q9HBH5 336 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 OPTCQ9UBM4 332 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 KCNE5Q9UJ90 142 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ING1Q9UK53 422 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 ERG28Q9UKR5 140 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 LAMP3Q9UQV4 416 aa4.17□□□□□ -1.74
CCDC88A-209ENST00000456975 POMPQ9Y244 141 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms