RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 VWFP04275 2813 aa9.9□□□□□ -0.82
USP40-210ENST00000454354 CMYA5Q8N3K9 4069 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 TRBV23-1A0A0A0MS06 115 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 J3QRE1 110 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 M0R1W7 72 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 EI24O14681 340 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 SYNGR1O43759 233 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 RPP14O95059 124 aaKnown RBP9.89□□□□□ -0.83
USP40-210ENST00000454354 APOL3O95236 402 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 HAAOP46952 286 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 RPL15P61313 204 aaKnown RBP9.89□□□□□ -0.83
USP40-210ENST00000454354 ZNF85Q03923 595 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 SHISA2Q6UWI4 295 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 CCDC121Q6ZUS5 278 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 PIP4P2Q8N4L2 257 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 OR10H4Q8NGA5 316 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 SSMEM1Q8WWF3 244 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 H1FXQ92522 213 aaKnown RBP9.89□□□□□ -0.83
USP40-210ENST00000454354 TNFRSF14Q92956 283 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 RNF166Q96A37 237 aaPredicted RBP9.89□□□□□ -0.83
USP40-210ENST00000454354 NRIP2Q9BQI9 281 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 PKIBQ9C010 78 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 HES4Q9HCC6 221 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 IMPAD1Q9NX62 359 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 POLDIP2Q9Y2S7 368 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 ORC6Q9Y5N6 252 aa9.89□□□□□ -0.83
USP40-210ENST00000454354 A0A0U1RQK1 487 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 FAM181BA6NEQ2 426 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 ANKRD61A6NGH8 418 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 POM121CA8CG34 1229 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 RNASEK-C17orf49H0YIS7 233 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 NDUFB7P17568 137 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 ATP6V1E1P36543 226 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 GABRA2P47869 451 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 SNRPGP62308 76 aaKnown RBP9.88□□□□□ -0.83
USP40-210ENST00000454354 ACTC1P68032 377 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 ACTA1P68133 377 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 GUCA2AQ02747 115 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 IL24Q13007 206 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 OCLNQ16625 522 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 MEDAGQ5VYS4 303 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 PRSS35Q8N3Z0 413 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 ZNRF1Q8ND25 227 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 ZNF488Q96MN9 340 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 CHIAQ9BZP6 476 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 CHST5Q9GZS9 411 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 METTL8Q9H825 291 aaKnown RBP9.88□□□□□ -0.83
USP40-210ENST00000454354 PLEKHA1Q9HB21 404 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 SIRT7Q9NRC8 400 aa9.88□□□□□ -0.83
USP40-210ENST00000454354 LOC107986453A0A1B0GWG9 222 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 A0A1W2PQ09 198 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 RFPL4AA6NLU0 287 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 RFPL4AL1F8VTS6 287 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 SYT7O43581 403 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 ENTPD6O75354 484 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 GATBO75879 557 aaKnown RBP9.87□□□□□ -0.83
USP40-210ENST00000454354 NDUFA7O95182 113 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 UBCP0CG48 685 aaKnown RBP9.87□□□□□ -0.83
USP40-210ENST00000454354 KIR3DL2P43630 455 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 IER3P46695 156 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 ERVK11-1P61568 191 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 ODF4Q2M2E3 257 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 TP53I3Q53FA7 332 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 NCR3LG1Q68D85 454 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 FDX2Q6P4F2 183 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 FIP1L1Q6UN15 594 aaKnown RBP9.87□□□□□ -0.83
USP40-210ENST00000454354 FAM220AQ7Z4H9 259 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 CALHM1Q8IU99 346 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 PDZD9Q8IXQ8 264 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 C10orf67Q8IYJ2 551 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 CBR4Q8N4T8 237 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 ZNF561Q8N587 486 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 CD177Q8N6Q3 437 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 TMEM185AQ8NFB2 350 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 TBC1D15Q8TC07 691 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 DYRK2Q92630 601 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 UBE2FQ969M7 185 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 C10orf35Q96D05 121 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 MBOAT4Q96T53 435 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 SLITRK2Q9H156 845 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 ELL3Q9HB65 397 aaPredicted RBP9.87□□□□□ -0.83
USP40-210ENST00000454354 ZNRD1Q9P1U0 126 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 GNG8Q9UK08 70 aa9.87□□□□□ -0.83
USP40-210ENST00000454354 CAB39Q9Y376 341 aaPredicted RBP9.87□□□□□ -0.83
USP40-210ENST00000454354 IGKV1-27A0A075B6S5 117 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 A0A1B0GUS0 222 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 A6NIN4 97 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 SLC1A7O00341 560 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 NPFFO15130 113 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 NXPH2O95156 264 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 IGHV4-59P01825 116 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 FBP1P09467 338 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 GABRB1P18505 474 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 MDKP21741 143 aaPredicted RBP9.86□□□□□ -0.83
USP40-210ENST00000454354 EEF1B2P24534 225 aaKnown RBP9.86□□□□□ -0.83
USP40-210ENST00000454354 UBE2E1P51965 193 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 RELBQ01201 579 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 KLRD1Q13241 179 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 UBE2V2Q15819 145 aa9.86□□□□□ -0.83
USP40-210ENST00000454354 ZIK1Q3SY52 487 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms