RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PRSS50Q9UI38 385 aa6.51□□□□□ -1.37
SYNE1-213ENST00000448038 RNF150Q9ULK6 438 aa6.51□□□□□ -1.37
SYNE1-213ENST00000448038 LOC102723996A0A087X1L8 192 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 NGFP01138 241 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 GABRB1P18505 474 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PSG4Q00888 419 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 HLXQ14774 488 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TSC22D1Q15714 1073 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 BRICD5Q6PL45 260 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 SLC25A47Q6Q0C1 308 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 CHST6Q9GZX3 395 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 NARFLQ9H6Q4 476 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 MYOZ1Q9NP98 299 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TINAGQ9UJW2 476 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TRIM64CA6NLI5 447 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 C3orf80F5H4A9 247 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PPIHO43447 177 aaKnown RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 FBXO24O75426 580 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 P2RY6Q15077 328 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PDLIM3Q53GG5 364 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PRAMEF5Q5TYX0 476 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PRAMEF6Q5VXH4 476 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 RFLNBQ8N5W9 214 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 UBALD1Q8TB05 177 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 WDFY2Q96P53 400 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 ZNF355PQ9NSJ1 428 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 GNB2P62879 340 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 ZNF441Q8N8Z8 693 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM68Q96MH6 324 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 GPR27Q9NS67 375 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 IGLV1-36A0A0B4J1U3 117 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 A0A0B4J2A0 478 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 CDX4O14627 284 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TSPAN4O14817 238 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PDCD6O75340 191 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 THY1P04216 161 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 PIGPP57054 158 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 HBG1P69891 147 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 HBG2P69892 147 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 SSX9Q7RTT3 188 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 SKA3Q8IX90 412 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 SLC35G3Q8N808 338 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 MRPS24Q96EL2 167 aaKnown RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TINAGL1Q9GZM7 467 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 RAB1BQ9H0U4 201 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 KCNK15Q9H427 330 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 SHPKQ9UHJ6 478 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 ZNF230Q9UIE0 474 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-213ENST00000448038 ST6GALNAC2Q9UJ37 374 aa6.5□□□□□ -1.37
SYNE1-213ENST00000448038 TRAV8-7A0A075B6U6 113 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 SMLR1H3BR10 107 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TRAF3IP2O43734 574 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 GMDSO60547 372 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 NANOS3P60323 173 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 UBE2MP61081 183 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 ESCO2Q56NI9 601 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 C19orf48Q6RUI8 117 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 GLCCI1Q86VQ1 547 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 DRAXINQ8NBI3 349 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TERB2Q8NHR7 220 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TIMP4Q99727 224 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 ZNF703Q9H7S9 590 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 A0A1W2PPV4 95 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 MEX3AA1L020 520 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM229AB2RXF0 380 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 SSX5O60225 188 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CYTIPO60759 359 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CNIH1O95406 144 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 RAB11AP62491 216 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 KRBOX4Q5JUW0 171 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 ARRDC1Q8N5I2 433 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM217Q8N7C4 229 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 ZNF519Q8TB69 540 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 GPX8Q8TED1 209 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CYB5R1Q9UHQ9 305 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 AGPAT2O15120 278 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 KLF7O75840 302 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TTRP02766 147 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 S100A9P06702 114 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CELA3AP09093 270 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 OR4E1P0C645 316 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CALCRP30988 508 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 NKX2-1P43699 371 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 LINC00303Q3SY05 128 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM91Q6ZNR0 172 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 BTLAQ7Z6A9 289 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CADM3Q8N126 398 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 RTN4IP1Q8WWV3 396 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 PLPPR2Q96GM1 343 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TSNAXQ99598 290 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 MESP1Q9BRJ9 268 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 OR2J1Q9GZK6 312 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 LIN7CQ9NUP9 197 aaKnown RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 SIRT4Q9Y6E7 314 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 CDIPTO14735 213 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 RTL8BQ17RB0 113 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM268Q5VZI3 342 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 ADAT3Q96EY9 351 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-213ENST00000448038 AMELYQ99218 206 aa6.49□□□□□ -1.37
SYNE1-213ENST00000448038 RNF32Q9H0A6 362 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms