RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 TREX1Q9NSU2 369 aa3.78□□□□□ -1.8
USP54-206ENST00000433394 RHBDL2Q9NX52 303 aa3.78□□□□□ -1.8
USP54-206ENST00000433394 CFL2Q9Y281 166 aa3.78□□□□□ -1.8
USP54-206ENST00000433394 LAMB4A4D0S4 1761 aa3.78□□□□□ -1.8
USP54-206ENST00000433394 SHANK3Q9BYB0 1731 aa3.78□□□□□ -1.8
USP54-206ENST00000433394 PAPPAQ13219 1627 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 A0A0U1RQV1 116 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 KDELR3O43731 214 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 GCM2O75603 506 aaPredicted RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 GATBO75879 557 aaKnown RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 IGFBP3P17936 291 aaPredicted RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 GABRG2P18507 467 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 CCNOP22674 350 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 S100A5P33763 92 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 MYCNOSP40205 109 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 PAFAH1B2P68402 229 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 RPL18AQ02543 176 aaKnown RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 PNOCQ13519 176 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 VAMP3Q15836 100 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 FAM83EQ2M2I3 478 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 SLC25A25Q6KCM7 469 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 CD300LGQ6UXG3 332 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 Q6ZR03 302 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 LINC00336Q6ZUF6 198 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 SPATA24Q86W54 205 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 TMEM256Q8N2U0 113 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 OR4A15Q8NGL6 344 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 LRRC20Q8TCA0 184 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 CDS1Q92903 461 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 MSANTD3Q96H12 275 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 ATP6V1G3Q96LB4 118 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 RDH12Q96NR8 316 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 TMEM243Q9BU79 118 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 NSRP1Q9H0G5 558 aaKnown RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 OR52D1Q9H346 318 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 CHMP5Q9NZZ3 219 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 YTHDF2Q9Y5A9 579 aaKnown RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 BCL9LQ86UU0 1499 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 THSD7AQ9UPZ6 1657 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 KDM6AO15550 1401 aaPredicted RBP3.77□□□□□ -1.81
USP54-206ENST00000433394 ATRNO75882 1429 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 ITGB4P16144 1822 aa3.77□□□□□ -1.81
USP54-206ENST00000433394 IGKV2-28A0A075B6P5 120 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 SEC14L6B5MCN3 397 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 KRBOX1C9JBD0 128 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 POLR1CO15160 346 aaPredicted RBP3.76□□□□□ -1.81
USP54-206ENST00000433394 NPPAP01160 153 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 IGKV2D-28P01615 120 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 IGKV3-11P04433 115 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 ADRA2AP08913 450 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 MRPL3P09001 348 aaKnown RBP3.76□□□□□ -1.81
USP54-206ENST00000433394 SLC35G6P0C7Q6 338 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 NPY1RP25929 384 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 NDUFA8P51970 172 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 TAS2R31P59538 309 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 YIF1BQ5BJH7 314 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 CPTPQ5TA50 214 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 KRTAP5-1Q6L8H4 278 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 Q6ZSR6 202 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 BAALCQ8WXS3 180 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 OR8D1Q8WZ84 308 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 TOP1MTQ969P6 601 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 FAM104AQ969W3 186 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 C8orf76Q96K31 380 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 GLT1D1Q96MS3 346 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 TSNAXQ99598 290 aaKnown RBP3.76□□□□□ -1.81
USP54-206ENST00000433394 KCNS3Q9BQ31 491 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 ZNF430Q9H8G1 570 aaPredicted RBP3.76□□□□□ -1.81
USP54-206ENST00000433394 EXOSC4Q9NPD3 245 aaKnown RBP3.76□□□□□ -1.81
USP54-206ENST00000433394 OR51B2Q9Y5P1 312 aa3.76□□□□□ -1.81
USP54-206ENST00000433394 MANBAO00462 879 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 GATCO43716 136 aaKnown RBP3.75□□□□□ -1.81
USP54-206ENST00000433394 CTNSO60931 367 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 IGHV3-11P01762 117 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 APOA1P02647 267 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 ZNF3P17036 446 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 GFERP55789 205 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 SLC35A1P78382 337 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 OR1Q1Q15612 314 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 C6orf183Q5T699 404 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 MFSD14CQ5VZR4 134 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 DUPD1Q68J44 220 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 GUSBP11Q6P575 273 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 OPN5Q6U736 354 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 SLC16A13Q7RTY0 426 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 ERO1BQ86YB8 467 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 FAM9CQ8IZT9 166 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 OR6N2Q8NGY6 317 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 OR8K3Q8NH51 312 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 DCAKDQ8WVC6 231 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 TFGQ92734 400 aaPredicted RBP3.75□□□□□ -1.81
USP54-206ENST00000433394 FRZBQ92765 325 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 L3HYPDHQ96EM0 354 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 CENPNQ96H22 339 aaPredicted RBP3.75□□□□□ -1.81
USP54-206ENST00000433394 ARL5BQ96KC2 179 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 CATSPER2Q96P56 530 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 SULT4A1Q9BR01 284 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 SFXN3Q9BWM7 321 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 OSBPL11Q9BXB4 747 aa3.75□□□□□ -1.81
USP54-206ENST00000433394 FGF23Q9GZV9 251 aaPredicted RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms