RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 MIDNQ504T8 468 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 SYT14P1Q58G82 188 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 CST9LP1Q5W188 147 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF709Q8N972 641 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 GATSQ8NAP1 163 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF160Q9HCG1 818 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF727A8MUV8 499 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 GLSO94925 669 aaPredicted RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 PRICKLE4Q2TBC4 344 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 Q6ZN92 141 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 WDFY1Q8IWB7 410 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 OR4K5Q8NGD3 323 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 OR9K2Q8NGE7 335 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 GPX8Q8TED1 209 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 TMEM239Q8WW34 195 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ST8SIA1Q92185 356 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ARSGQ96EG1 525 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 SYNPO2LQ9H987 977 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF586Q9NXT0 402 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 A0A1W2PQM1 296 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 IFITM10A6NMD0 228 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 XRCC3O43542 346 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ZNF354AO60765 605 aaPredicted RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 CD37P11049 281 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 ELAVL4P26378 380 aaKnown RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 NAAAQ02083 359 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 BCORP1Q8N888 145 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 LFNGQ8NES3 379 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 STXBP6Q8NFX7 210 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 OR51A7Q8NH64 312 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 SLC35A4Q96G79 324 aa8.72□□□□□ -1.01
USP54-205ENST00000424265 TCF20Q9UGU0 1960 aaKnown RBP8.72□□□□□ -1.01
USP54-205ENST00000424265 FOXS1O43638 330 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 CH25HO95992 272 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 CD74P04233 296 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 HKR1P10072 659 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 FPR2P25090 351 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 TMPPEQ6ZT21 453 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 CMTM4Q8IZR5 234 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 CT55Q8WUE5 264 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 NTNG2Q96CW9 530 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 SLCO5A1Q9H2Y9 848 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 PARP11Q9NR21 331 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 ZNF281Q9Y2X9 895 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 ZNF724A8MTY0 619 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 NPIPA3F8WFD2 350 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 VSIG10L2P0DP72 767 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 PSMB6P28072 239 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 P2RX1P51575 399 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 RPS23P62266 143 aaKnown RBP8.71□□□□□ -1.01
USP54-205ENST00000424265 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.71□□□□□ -1.01
USP54-205ENST00000424265 FDX2Q6P4F2 183 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 PRR22Q8IZ63 422 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 PNLDC1Q8NA58 520 aaKnown RBP8.71□□□□□ -1.01
USP54-205ENST00000424265 B3GALT1Q9Y5Z6 326 aa8.71□□□□□ -1.01
USP54-205ENST00000424265 CCL25O15444 150 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 NDUFB2O95178 105 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 TNFSF4P23510 183 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 PDX1P52945 283 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 ZNF750Q32MQ0 723 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 MITD1Q8WV92 249 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 RAB40AQ8WXH6 277 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 FRZBQ92765 325 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 CABLES2Q9BTV7 478 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 MCTS1Q9ULC4 181 aaKnown RBP8.71□□□□□ -1.02
USP54-205ENST00000424265 TAAR5O14804 337 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 DDAH2O95865 285 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 CD14P08571 375 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 IL6RP08887 468 aaPredicted RBP8.71□□□□□ -1.02
USP54-205ENST00000424265 APOBEC1P41238 236 aaKnown RBP8.71□□□□□ -1.02
USP54-205ENST00000424265 ZFP36L2P47974 494 aaKnown RBP8.71□□□□□ -1.02
USP54-205ENST00000424265 OR1Q1Q15612 314 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 COX20Q5RI15 118 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 TMEM225Q6GV28 225 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 PODNL1Q6PEZ8 512 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 ZNF66Q6ZN08 573 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 OR52L2PQ8NGH6 319 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 DOK4Q8TEW6 326 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 SPACA9Q96E40 222 aaPredicted RBP8.71□□□□□ -1.02
USP54-205ENST00000424265 OR5B2Q96R09 309 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 CNTD2Q9H8S5 307 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 ZNF337Q9Y3M9 751 aa8.71□□□□□ -1.02
USP54-205ENST00000424265 A0A1W2PS29 197 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 CTXN2P0C2S0 81 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 GDF1P27539 372 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 DAP3P51398 398 aaKnown RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 IL13RA1P78552 427 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 RPUSD3Q6P087 351 aaKnown RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 FCRLAQ7L513 359 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 MSRB3Q8IXL7 192 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ZNF679Q8IYX0 411 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 OR2AJ1Q8NGZ0 328 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 APH1AQ96BI3 265 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 FGF20Q9NP95 211 aaPredicted RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 P4HTMQ9NXG6 502 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SPAARA0A1B0GVQ0 90 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 UMODP07911 640 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 OR10J4P0C629 311 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 PF4V1P10720 104 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms