RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PLAURQ03405 335 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 AMMECR1LQ6DCA0 310 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 UNQ9370/PRO34162Q6UXP9 181 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 Q8WTZ3 238 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 C10orf90Q96M02 699 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 HMGN4O00479 90 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 LYZL6O75951 148 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 RPEL1Q2QD12 228 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 OR2I1PQ8NGU4 316 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 COL11A1P12107 1806 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 LAMB2P55268 1798 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TRBV23-1A0A0A0MS06 115 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 MMP7P09237 267 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 PRF1P14222 555 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 BCL3P20749 454 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 CLPPQ16740 277 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TIGD3Q6B0B8 471 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 WDR73Q6P4I2 378 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 RELL2Q8NC24 303 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM116Q8NCL8 245 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 RAB40CQ96S21 281 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FAAP24Q9BTP7 215 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 MRPS16Q9Y3D3 137 aaKnown RBP6.16□□□□□ -1.42
SCN1A-204ENST00000423058 TRAPPC1Q9Y5R8 145 aa6.16□□□□□ -1.42
SCN1A-204ENST00000423058 FAM181BA6NEQ2 426 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 OR5B21A6NL26 309 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 AQP8O94778 261 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 DLX1P56177 255 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 NANOGP1Q8N7R0 232 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 KIAA1958Q8N8K9 716 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 C5orf17Q8NAS9 161 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 DUSP18Q8NEJ0 188 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 OR4C16Q8NGL9 310 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 DOK1Q99704 481 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 TMUB1Q9BVT8 246 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 AUP1Q9Y679 476 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 DHHO43323 396 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 MNX1P50219 401 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 LYZP61626 148 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 HES3Q5TGS1 186 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 RBPMSQ93062 196 aaKnown RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 IL22RA2Q969J5 263 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 UBE2FQ969M7 185 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 ALKBH3Q96Q83 286 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 UQCC1Q9NVA1 299 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 FZR1Q9UM11 496 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 MTCH2Q9Y6C9 303 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 ALS2Q96Q42 1657 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 RBBP6Q7Z6E9 1792 aaKnown RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 APEHP13798 732 aaKnown RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 FAHP16930 419 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 CDC34P49427 236 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 GP2P55259 537 aaKnown RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 CD226Q15762 336 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 TCTN1Q2MV58 587 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 C19orf54Q5BKX5 351 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 FBXL6Q8N531 539 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 GSX1Q9H4S2 264 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 FITM1A5D6W6 292 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 OOEPA6NGQ2 149 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 C5orf52A6NGY3 159 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 HOXC4P09017 264 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 RTN4RL1Q86UN2 441 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 TGIF2LXQ8IUE1 241 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 MYOZ3Q8TDC0 251 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 CMBLQ96DG6 245 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 LINC00615Q96LM1 132 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 C4orf45Q96LM5 186 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 PACRGQ96M98 296 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-204ENST00000423058 RHNO1Q9BSD3 238 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 TMED3Q9Y3Q3 217 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 INSIG2Q9Y5U4 225 aa6.15□□□□□ -1.42
SCN1A-204ENST00000423058 DOCK9Q9BZ29 2069 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 B3GALT4O96024 378 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 VDAC1P21796 283 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 RELAQ04206 551 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 ATP6V1FQ16864 119 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 EBLN2Q6P2I7 272 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 CXorf67Q86X51 503 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-204ENST00000423058 HGDQ93099 445 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 GPR78Q96P69 363 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 DERL3Q96Q80 235 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 SEC11CQ9BY50 192 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 A0A1B0GTQ1 180 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 ARRDC5A6NEK1 342 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 ADAM20O43506 726 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 DEDDO75618 318 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 SCGB1A1P11684 91 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 LYG2Q86SG7 212 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 SYS1Q8N2H4 156 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 OR2A5Q96R48 311 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 MS4A5Q9H3V2 200 aa6.15□□□□□ -1.43
SCN1A-204ENST00000423058 MRPL22Q9NWU5 206 aaKnown RBP6.15□□□□□ -1.43
SCN1A-204ENST00000423058 SNRPGP15A8MWD9 76 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 BMPR1BO00238 502 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 FCGR3BO75015 233 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 RIGQ13278 110 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 SCGB1D4Q6XE38 83 aa6.14□□□□□ -1.43
SCN1A-204ENST00000423058 OR10V1Q8NGI7 309 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms