RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MEX3BQ6ZN04 569 aaKnown RBP14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 SAXO1Q8IYX7 474 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 OR10K1Q8NGX5 313 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 ELMOD3Q96FG2 381 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 PKIBQ9C010 78 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 DYNLRB1Q9NP97 96 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 CISD1Q9NZ45 108 aaKnown RBP14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 FBLN5Q9UBX5 448 aa14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 MRPS7Q9Y2R9 242 aaKnown RBP14.59□□□□□ -0.07
CCDC28B-202ENST00000421922 TMEM14DPA8MWL7 114 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 DEFB108AA8MXU0 73 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 E7EQL1 145 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 F5H5P2 479 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 H0YL77 283 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 M0R233 179 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 MLNRO43193 412 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 SPRY3O43610 288 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 CDC14BO60729 498 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 CD40LGP29965 261 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 APOBEC3AP31941 199 aaPredicted RBP14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 PITPNBP48739 271 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 SRP9P49458 86 aaKnown RBP14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 PPP5CP53041 499 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 RAB12Q6IQ22 244 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 CALHM1Q8IU99 346 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 FBXL14Q8N1E6 418 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 C15orf40Q8WUR7 153 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 SLAMF9Q96A28 289 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 DHRS9Q9BPW9 319 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 FGF23Q9GZV9 251 aaPredicted RBP14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 BANF2Q9H503 90 aa14.58□□□□□ -0.07
CCDC28B-202ENST00000421922 A0A0A6YYH2 397 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 A6NJ64 397 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 ZSCAN5BA6NJL1 495 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 PRSS44E7EML9 344 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 C19orf84I3L1E1 186 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 J3QRK9 145 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 LDLRAD4O15165 306 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 CTAG2O75638 210 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 GTF2F2P13984 249 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 MGMTP16455 207 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 CDK2P24941 298 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 EFNB2P52799 333 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 UNC119Q13432 240 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 DCTN2Q13561 401 aaKnown RBP14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 ZNF672Q499Z4 452 aaPredicted RBP14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 PYHIN1Q6K0P9 492 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 CRIP3Q6Q6R5 217 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 Q6ZR03 302 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 C1QL2Q7Z5L3 287 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 CDH24Q86UP0 819 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 IZUMO1Q8IYV9 350 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 DTX3Q8N9I9 347 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 OR51T1Q8NGJ9 327 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 NEUROG1Q92886 237 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 DIRC2Q96SL1 478 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 SELENOIQ9C0D9 397 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 OR51I2Q9H344 312 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 IL36GQ9NZH8 169 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 ZDHHC8Q9ULC8 765 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 KLF2Q9Y5W3 355 aaPredicted RBP14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 V9GYH0 126 aa14.58□□□□□ -0.08
CCDC28B-202ENST00000421922 SIAH2O43255 324 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 TPD52L2O43399 206 aaKnown RBP14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 PLAUP00749 431 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 CPT2P23786 658 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 CD200P41217 278 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 MNDAP41218 407 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 IL24Q13007 206 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 PLA2G7Q13093 441 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 OR8H2Q8N162 312 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 SCCPDHQ8NBX0 429 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 ACBD4Q8NC06 268 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 OR56B1Q8NGI3 324 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 HS3ST6Q96QI5 342 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 FAIMQ9NVQ4 179 aa14.57□□□□□ -0.08
CCDC28B-202ENST00000421922 hCG_1807616A0A1W2PRN6 198 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 B9A039 149 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 XRCC3O43542 346 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 CHRM2P08172 466 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 INPP1P49441 399 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 SNRPD2P62316 118 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 RPS27AP62979 156 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 QRFPP83859 136 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 TNFAIP6P98066 277 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 ZNF154Q13106 437 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 ASCL4Q6XD76 172 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 TMEM200AQ86VY9 491 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 SNX29P2Q8IUI4 249 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 Q8IYB0 196 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 OSR2Q8N2R0 312 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 GDPD1Q8N9F7 314 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 CHST4Q8NCG5 386 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 TMEM104Q8NE00 496 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 GTF3AQ92664 365 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 FBXW5Q969U6 566 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 MRPS24Q96EL2 167 aaKnown RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 C1orf147Q96MC9 270 aaPredicted RBP14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 TMEM204Q9BSN7 226 aa14.56□□□□□ -0.08
CCDC28B-202ENST00000421922 CCDC32Q9BV29 185 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms