RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 A6NLC8 198 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 EDN3P14138 238 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 IGHV1-2P23083 117 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 HAAOP46952 286 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 UCP2P55851 309 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 SLC25A26Q70HW3 274 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 C9orf106Q8NAJ2 232 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 CPEB3Q8NE35 698 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 OR4C16Q8NGL9 310 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 GRPEL2Q8TAA5 225 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 CMBLQ96DG6 245 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 DHRS9Q9BPW9 319 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 LPAR5Q9H1C0 372 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 KLK11Q9UBX7 282 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 ST3GAL6Q9Y274 331 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 SH2D1BO14796 132 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 OR7C1O76099 320 aaPredicted RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 PET100P0DJ07 73 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 SMCO1Q147U7 214 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 TCTE3Q8IZS6 198 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 RBMXL3Q8N7X1 1067 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 ZNF611Q8N823 705 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 C12orf4Q9NQ89 552 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 NDRG3Q9UGV2 375 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 SLC23A1Q9UHI7 598 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 POU2F3Q9UKI9 436 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 STARD10Q9Y365 291 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 TTC28Q96AY4 2481 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 FAM172BPA6NC97 362 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 RAB27BO00194 218 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 COX5AP20674 150 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 RBMXP38159 391 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 ID4P47928 161 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 CD83Q01151 205 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 TMED4Q7Z7H5 227 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 C12orf45Q8N5I9 185 aaPredicted RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 CISD2Q8N5K1 135 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 EMG1Q92979 244 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 DIRC2Q96SL1 478 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 OCSTAMPQ9BR26 566 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 ADAT1Q9BUB4 502 aaKnown RBP7.27□□□□□ -1.25
USP54-203ENST00000418501 ST6GALNAC5Q9BVH7 336 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 PECRQ9BY49 303 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 B3GNT2Q9NY97 397 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 RHBDD3Q9Y3P4 386 aa7.27□□□□□ -1.25
USP54-203ENST00000418501 ZNF318Q5VUA4 2279 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 OTOGLQ3ZCN5 2332 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 C16orf97H3BN30 126 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SPNP16150 400 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CD34P28906 385 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SRPXP78539 464 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 UBE2V2Q15819 145 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 OR10K2Q6IF99 312 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CXorf67Q86X51 503 aaPredicted RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 RADILQ96JH8 1075 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 LYZL4Q96KX0 146 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 EHFQ9NZC4 300 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 MGAT4CQ9UBM8 478 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 C7orf66A4D0T2 115 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 TK1P04183 234 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CD74P04233 296 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CD3DP04234 171 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CSN2P05814 226 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 KIR2DL2P43627 348 aaPredicted RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 SRSF6Q13247 344 aaKnown RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 IKZF1Q13422 519 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 VAX1Q5SQQ9 334 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SGPP2Q8IWX5 399 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 OR51S1Q8NGJ8 323 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SPACA5Q96QH8 159 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 M0R1B8 84 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 RGS11O94810 467 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 NXPH2O95156 264 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 GNB3P16520 340 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 WT1P19544 449 aaPredicted RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 MPZP25189 248 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 KCNJ3P48549 501 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 CCR6P51684 374 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 EFNB2P52799 333 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SNU13P55769 128 aaKnown RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 CARTPTQ16568 116 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 GLDNQ6ZMI3 551 aaPredicted RBP7.26□□□□□ -1.25
USP54-203ENST00000418501 NOXA1Q86UR1 476 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 HOGA1Q86XE5 327 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 FAM185AQ8N0U4 392 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 FAM89BQ8N5H3 189 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 ZNF610Q8N9Z0 462 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 LILRB4Q8NHJ6 448 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 SLC2A8Q9NY64 477 aa7.26□□□□□ -1.25
USP54-203ENST00000418501 DEGS1O15121 323 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 PTAFRP25105 342 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 GPM6AP51674 278 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 RAB14P61106 215 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 FGF12P61328 243 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 SEC61A1P61619 476 aaKnown RBP7.25□□□□□ -1.25
USP54-203ENST00000418501 TRAT1Q6PIZ9 186 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 FAM58AQ8N1B3 248 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 SPICQ8N5J4 248 aa7.25□□□□□ -1.25
USP54-203ENST00000418501 ZNF431Q8TF32 576 aaPredicted RBP7.25□□□□□ -1.25
USP54-203ENST00000418501 SLC39A7Q92504 469 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms