RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 IKZF1Q13422 519 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 LPCAT3Q6P1A2 487 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 CSNK2A3Q8NEV1 391 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 PXT1Q8NFP0 134 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 GPR132Q9UNW8 380 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 SLC22A20A6NK97 555 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 SERPINA5P05154 406 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 AKR1C4P17516 323 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 HLA-GP17693 338 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 NBL1P41271 181 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 PMP22Q01453 160 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 TAF9Q16594 264 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 IGF2-ASQ6U949 168 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 LHFPL1Q86WI0 220 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 MAFIPQ8WZ33 124 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 LRFN3Q9BTN0 628 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 C12orf49Q9H741 205 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 IL36GQ9NZH8 169 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 HSF4Q9ULV5 492 aa17.4■□□□□ 0.38
USP39-204ENST00000409766 CD8AP01732 235 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 OR3A3P47888 321 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 OR3A2P47893 321 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 EXOSC2Q13868 293 aaKnown RBP17.39■□□□□ 0.37
USP39-204ENST00000409766 NKAPLQ5M9Q1 402 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 RPUSD3Q6P087 351 aaKnown RBP17.39■□□□□ 0.37
USP39-204ENST00000409766 OR5AP2Q8NGF4 316 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 OR13G1Q8NGZ3 307 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 EMG1Q92979 244 aaKnown RBP17.39■□□□□ 0.37
USP39-204ENST00000409766 POM121L2Q96KW2 1035 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 PRRX2Q99811 253 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 GP6Q9HCN6 339 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 ZFHX4Q86UP3 3567 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 DOCK7Q96N67 2140 aa17.39■□□□□ 0.37
USP39-204ENST00000409766 FXYD6-FXYD2A0A087WZ82 144 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNF850A8MQ14 1090 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ARPC5O15511 151 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNHIT1O43257 154 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 SS18L1O75177 396 aaPredicted RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 DUS4LO95620 317 aaKnown RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 IL18BPO95998 194 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 CFDP00746 253 aaPredicted RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 IFNA7P01567 189 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 NPY4RP50391 375 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 TAS2R31P59538 309 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 GMFBP60983 142 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 IGFL2Q6UWQ7 119 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 OVCH2Q7RTZ1 564 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 TMEM17Q86X19 198 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 APOBEC3DQ96AK3 386 aaPredicted RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 PHB2Q99623 299 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 FXYD6Q9H0Q3 95 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 C5orf66Q9H5L9 145 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNF581Q9P0T4 197 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNF175Q9Y473 711 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 RFPL4AA6NLU0 287 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 RFPL4AL1F8VTS6 287 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 PPP3CBP16298 524 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 VAMP1P23763 118 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 SORDQ00796 357 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 AADACL3Q5VUY0 350 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 FBXW9Q5XUX1 488 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 LIN54Q6MZP7 749 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 PEG10Q86TG7 708 aaKnown RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 MED12LQ86YW9 2145 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 TMEM185AQ8NFB2 350 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 OR56B2PQ8NGI1 322 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 MRPS24Q96EL2 167 aaKnown RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 FAAP24Q9BTP7 215 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNF701Q9NV72 531 aaPredicted RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 OSGIN2Q9Y236 505 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 CNOT1A5YKK6 2376 aaKnown RBP17.38■□□□□ 0.37
USP39-204ENST00000409766 ZNF292O60281 2723 aa17.38■□□□□ 0.37
USP39-204ENST00000409766 TRAV14DV4A0A0A6YYC5 116 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 SDCBPO00560 298 aaPredicted RBP17.37■□□□□ 0.37
USP39-204ENST00000409766 MSTNO14793 375 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 SFTPBP07988 381 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 MPGP29372 298 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 TMEM128Q5BJH2 165 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 CALHM1Q8IU99 346 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 OR8H3Q8N146 312 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 OSR2Q8N2R0 312 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 OR1K1Q8NGR3 316 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 HDHD3Q9BSH5 251 aaPredicted RBP17.37■□□□□ 0.37
USP39-204ENST00000409766 EHFQ9NZC4 300 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 GPR160Q9UJ42 338 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 IGKV1D-8A0A087WSZ0 117 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 IGHG3P01860 377 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 FPR2P25090 351 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 CHATP28329 748 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 S100A11P31949 105 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 PIGYQ3MUY2 71 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 CHRFAM7AQ494W8 412 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 FBXL14Q8N1E6 418 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 ZSCAN4Q8NAM6 433 aaPredicted RBP17.37■□□□□ 0.37
USP39-204ENST00000409766 NAXEQ8NCW5 288 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 OR51F2Q8NH61 342 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 TMEM230Q96A57 120 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 PPA2Q9H2U2 334 aa17.37■□□□□ 0.37
USP39-204ENST00000409766 CFAP47Q6ZTR5 3102 aa17.36■□□□□ 0.37
USP39-204ENST00000409766 TNRC6AQ8NDV7 1962 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms