RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FAM3DQ96BQ1 224 aa15.29■□□□□ 0.04
SDC1-203ENST00000403076 METTL9Q9H1A3 318 aa15.29■□□□□ 0.04
SDC1-203ENST00000403076 PPP1R3CQ9UQK1 317 aa15.29■□□□□ 0.04
SDC1-203ENST00000403076 POLDIP2Q9Y2S7 368 aa15.29■□□□□ 0.04
SDC1-203ENST00000403076 RAI1Q7Z5J4 1906 aaPredicted RBP15.28■□□□□ 0.04
SDC1-203ENST00000403076 A0A0B4J203 849 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 TRAPPC2LH3BP13 241 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 RHBDL1O75783 438 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 PTBP3O95758 552 aaKnown RBP15.28■□□□□ 0.04
SDC1-203ENST00000403076 HPXP02790 462 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 ARSBP15848 533 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 CFPP27918 469 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 GATA4P43694 442 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 IL24Q13007 206 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 SLC22A6Q4U2R8 563 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 C1QL2Q7Z5L3 287 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 C11orf53Q8IXP5 236 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 ZSCAN4Q8NAM6 433 aaPredicted RBP15.28■□□□□ 0.04
SDC1-203ENST00000403076 NEU4Q8WWR8 484 aaPredicted RBP15.28■□□□□ 0.04
SDC1-203ENST00000403076 AP3S1Q92572 193 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 SLC25A28Q96A46 364 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 TLNRD1Q9H1K6 362 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 CXorf56Q9H5V9 222 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 LIN7BQ9HAP6 207 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 SMURF1Q9HCE7 757 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 TREM2Q9NZC2 230 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 CACNA1DQ01668 2161 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 AKAP6Q13023 2319 aa15.28■□□□□ 0.04
SDC1-203ENST00000403076 H7C417 338 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 CDC14BO60729 498 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 TMEM127O75204 238 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 HTR3BO95264 441 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 UBBP0CG47 229 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 SNRPBP14678 240 aaKnown RBP15.27■□□□□ 0.04
SDC1-203ENST00000403076 MPZP25189 248 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 CAPZA1P52907 286 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 FAM166AQ6J272 317 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 MZT2AQ6P582 158 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 SAXO1Q8IYX7 474 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 BATF2Q8N1L9 274 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 PXT1Q8NFP0 134 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 OR10K1Q8NGX5 313 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 LIME1Q9H400 295 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 GCM1Q9NP62 436 aa15.27■□□□□ 0.04
SDC1-203ENST00000403076 BPNT1O95861 308 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 CSTBP04080 98 aaKnown RBP15.27■□□□□ 0.03
SDC1-203ENST00000403076 IRF2P14316 349 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 GMFBP60983 142 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 C2orf76Q3KRA6 126 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 WDR82Q6UXN9 313 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 BOLLQ8N9W6 283 aaKnown RBP15.27■□□□□ 0.03
SDC1-203ENST00000403076 MCFD2Q8NI22 146 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 TBC1D15Q8TC07 691 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 LRRC29Q8WV35 223 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 ACOT12Q8WYK0 555 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 NRGNQ92686 78 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 KCTD12Q96CX2 325 aaKnown RBP15.27■□□□□ 0.03
SDC1-203ENST00000403076 ZNF488Q96MN9 340 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 MRI1Q9BV20 369 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 PCDHB16Q9NRJ7 776 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 ABRACLQ9P1F3 81 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 COMMD3Q9UBI1 195 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 GHRLQ9UBU3 117 aa15.27■□□□□ 0.03
SDC1-203ENST00000403076 HRNRQ86YZ3 2850 aaPredicted RBP15.26■□□□□ 0.03
SDC1-203ENST00000403076 IGKV1-12A0A0C4DH73 117 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 IGHV1-69-2A0A0G2JMI3 117 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 LRRC30A6NM36 301 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 AKR7A2O43488 359 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 PAHP00439 452 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 IGKV1D-12P01611 117 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 CALCBP10092 127 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 SERPINA2P20848 420 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 PMELP40967 661 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 KRTAP10-9P60411 292 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 GPR176Q14439 515 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 ZNF404Q494X3 552 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 ASCL4Q6XD76 172 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 LGALS14Q8TCE9 139 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 CCL17Q92583 94 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 HPS1Q92902 700 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 CEP19Q96LK0 163 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 C6orf62Q9GZU0 229 aaPredicted RBP15.26■□□□□ 0.03
SDC1-203ENST00000403076 CST11Q9H112 138 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 KCNK15Q9H427 330 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 MTCH1Q9NZJ7 389 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 RNF7Q9UBF6 113 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 EDARQ9UNE0 448 aa15.26■□□□□ 0.03
SDC1-203ENST00000403076 OVOL3O00110 214 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 ZNF780AO75290 641 aaPredicted RBP15.25■□□□□ 0.03
SDC1-203ENST00000403076 CRTAPO75718 401 aaPredicted RBP15.25■□□□□ 0.03
SDC1-203ENST00000403076 KDM4BO94953 1096 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 BCL3P20749 454 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 HFEQ30201 348 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 OR10K2Q6IF99 312 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 OR10Z1Q8NGY1 313 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 KCNG3Q8TAE7 436 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 FAM46BQ96A09 425 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 SLIRPQ9GZT3 109 aaKnown RBP15.25■□□□□ 0.03
SDC1-203ENST00000403076 OR5V1Q9UGF6 321 aa15.25■□□□□ 0.03
SDC1-203ENST00000403076 PTPN13Q12923 2485 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms