RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RNF126Q9BV68 326 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 SLC19A3Q9BZV2 496 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TLNRD1Q9H1K6 362 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM138Q9NPI0 162 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 FBXO6Q9NRD1 293 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TAAR2Q9P1P5 351 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF391Q9UJN7 358 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 RARRES3Q9UL19 164 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 HEY1Q9Y5J3 304 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 NKTRP30414 1462 aaKnown RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CDC42BPAQ5VT25 1732 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 ABCC3O15438 1527 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TIAM1Q13009 1591 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 ARHGEF10O15013 1369 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 AHDC1Q5TGY3 1603 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CASKIN1Q8WXD9 1431 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 TET3O43151 1660 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 CCDC18Q5T9S5 1454 aa3.25□□□□□ -1.89
HMGB1-204ENST00000399489 IGHV4-4A0A075B6R2 117 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 SAA2-SAA4A0A096LPE2 208 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TRGV8A0A0C4DH27 118 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TEX48A0A1B0GUV7 120 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ISPDA4D126 451 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RBMY1BA6NDE4 496 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RBMY1EA6NEQ0 496 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 EFCAB9A8MZ26 197 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 C16orf97H3BN30 126 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 AZIN1O14977 448 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FABP7O15540 132 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CRYAAP02489 173 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CTSLP07711 333 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RBMY1DP0C7P1 496 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FAM228BP0C875 321 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RBMY1A1P0DJD3 496 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TCP1P17987 556 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 F8A1P23610 371 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 MARK3P27448 753 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 NTSP30990 170 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OPRL1P41146 370 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RPL5P46777 297 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 APOC4P55056 127 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR12D2P58182 307 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 VSX2P58304 361 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 PPP1CBP62140 327 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 MXD1Q05195 221 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CLINT1Q14677 625 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 IRF4Q15306 451 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CEACAM21Q3KPI0 293 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR2T5Q6IEZ7 315 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FBXL22Q6P050 247 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 P2RY8Q86VZ1 359 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 C9orf40Q8IXQ3 194 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR6V1Q8N148 313 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ZFP41Q8N8Y5 198 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR6K3Q8NGY3 331 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR2T29Q8NH02 315 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CHCHD10Q8WYQ3 142 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 MRAP2Q96G30 205 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RBP7Q96R05 134 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 NODALQ96S42 347 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 VAT1Q99536 393 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CCDC90BQ9GZT6 254 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 SPNS1Q9H2V7 528 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 METTL17Q9H7H0 456 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 UGT1A8Q9HAW9 530 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 SH2D2AQ9NP31 389 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 IMPAD1Q9NX62 359 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 GSKIPQ9P0R6 139 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 OR52A1Q9UKL2 312 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ASB4Q9Y574 426 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 DIP2AQ14689 1571 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 NWD1Q149M9 1564 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FER1L5A0AVI2 2057 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ABCC11Q96J66 1382 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ADGBQ8N7X0 1667 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 EEA1Q15075 1411 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 LRRIQ1Q96JM4 1722 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 SMCHD1A6NHR9 2005 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 FAM240AA0A1B0GVK7 77 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 A0A1W2PRG6 482 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TNFRSF11BO00300 401 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 EIF1BO60739 113 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 MT-ND4P03905 459 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 H2AFZP0C0S5 128 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 HIST1H1EP10412 219 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 CD37P11049 281 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 COX4I1P13073 169 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF17P17021 662 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 GGT1P19440 569 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RPS12P25398 132 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 GDF1P27539 372 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RPA3P35244 121 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 EIF1P41567 113 aaKnown RBP3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TTPAP49638 278 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 KLK7P49862 253 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 RAB38P57729 211 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ERVPABLB-1P60509 514 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 TWF1Q12792 350 aa3.24□□□□□ -1.89
HMGB1-204ENST00000399489 ATP6AP1Q15904 470 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms