RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 A8MXK9 166 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 DNPH1O43598 174 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 SNAPC5O75971 98 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 IGHEP01854 428 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 LCATP04180 440 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 CRHP06850 196 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 DLSTP36957 453 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 AKR1C2P52895 323 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 AKR1C1Q04828 323 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 DRAM2Q6UX65 266 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 Q6ZPA2 131 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 CSNK2A3Q8NEV1 391 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 WNT2BQ93097 391 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 OR10C1Q96KK4 312 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 FOXB1Q99853 325 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 FAAP24Q9BTP7 215 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 OR2H1Q9GZK4 316 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 NCOR1O75376 2440 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 SFT2D2O95562 160 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 EDN3P14138 238 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 FGL1Q08830 312 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 EIF3IQ13347 325 aaKnown RBP11.62□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF345Q14585 488 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 NKAPLQ5M9Q1 402 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 RPUSD3Q6P087 351 aaKnown RBP11.62□□□□□ -0.55
CCDC3-202ENST00000378839 OR52H1Q8NGJ2 320 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 EHFQ9NZC4 300 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 GHRLQ9UBU3 117 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 ATPIF1Q9UII2 106 aa11.62□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF503-AS2A6NEH8 195 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TERTO14746 1132 aaKnown RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 BCL2L11O43521 198 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 MTRF1O75570 445 aaKnown RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 FGF2P09038 288 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TMEM225BP0DP42 221 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 HTR5AP47898 357 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 PDCD1Q15116 288 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TAF9Q16594 264 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TSPO2Q5TGU0 170 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 USB1Q9BQ65 265 aaKnown RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 PLA2G3Q9NZ20 509 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 LRFN1Q9P244 771 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 FREM1Q5H8C1 2179 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 A0A0D9SG52 128 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 C5orf51A6NDU8 294 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 CYTIPO60759 359 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 MMP7P09237 267 aaPredicted RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 CNR1P21554 472 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 FPR2P25090 351 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 AGTR1P30556 359 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 FAM3AP98173 230 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 SRYQ05066 204 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 PIGYQ3MUY2 71 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 BATF2Q8N1L9 274 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 OR5AP2Q8NGF4 316 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TAAR9Q96RI9 348 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 RASL12Q9NYN1 266 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 CSAG2Q9Y5P2 127 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 BDP1A6H8Y1 2624 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 CFAP47Q6ZTR5 3102 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 AHCTF1Q8WYP5 2266 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 MSGN1A6NI15 193 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 M0R296 226 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 OR2F2O95006 317 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 OR2F1Q13607 317 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 C9orf135Q5VTT2 229 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 TMEM42Q69YG0 159 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 UNQ6126/PRO20091Q6UXV3 157 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 ACOT7LQ6ZUV0 252 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 ZSCAN4Q8NAM6 433 aaPredicted RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 BVESQ8NE79 360 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 EMG1Q92979 244 aaKnown RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF701Q9NV72 531 aaPredicted RBP11.61□□□□□ -0.55
CCDC3-202ENST00000378839 AK3Q9UIJ7 227 aa11.61□□□□□ -0.55
CCDC3-202ENST00000378839 FAM74A7A6NL05 159 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 SFTPBP07988 381 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 CD59P13987 128 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 PGAM2P15259 253 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 PTGER4P35408 488 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 FAM74A3Q4VXF1 159 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 AKIRIN2Q53H80 203 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 C2CD4CQ8TF44 421 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 OR5AC2Q9NZP5 309 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 COMMD9Q9P000 198 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 hCG_38984A0A1B0GV85 526 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 CDX4O14627 284 aaPredicted RBP11.6□□□□□ -0.55
CCDC3-202ENST00000378839 ZP3P21754 424 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 PSMB6P28072 239 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 LHX2P50458 406 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 RIPPLY1Q0D2K3 151 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 ACTBL2Q562R1 376 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 ZFP82Q8N141 532 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 OR2M7Q8NG81 312 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 LILRB1Q8NHL6 650 aaPredicted RBP11.6□□□□□ -0.55
CCDC3-202ENST00000378839 C10orf35Q96D05 121 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 MARS2Q96GW9 593 aaKnown RBP11.6□□□□□ -0.55
CCDC3-202ENST00000378839 SULT4A1Q9BR01 284 aa11.6□□□□□ -0.55
CCDC3-202ENST00000378839 CHMP1AQ9HD42 196 aaPredicted RBP11.6□□□□□ -0.55
CCDC3-202ENST00000378839 GEMIN2O14893 280 aaKnown RBP11.59□□□□□ -0.55
CCDC3-202ENST00000378839 SP9P0CG40 484 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms