RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TM2D1Q9BX74 207 aa14.34□□□□□ -0.11
SDC4-201ENST00000372733 EIF5A2Q9GZV4 153 aaKnown RBP14.34□□□□□ -0.11
SDC4-201ENST00000372733 SH3BGRL3Q9H299 93 aa14.34□□□□□ -0.11
SDC4-201ENST00000372733 ZNF160Q9HCG1 818 aa14.34□□□□□ -0.11
SDC4-201ENST00000372733 PLEKHJ1Q9NW61 149 aa14.34□□□□□ -0.11
SDC4-201ENST00000372733 OR5H15A6NDH6 313 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 GLI4P10075 376 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 PTGDSP41222 190 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 ALDH3B1P43353 468 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 PIGPP57054 158 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 HMGN3Q15651 99 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 FAM69BQ5VUD6 431 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 METTL7AQ9H8H3 244 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 GHRLQ9UBU3 117 aa14.33□□□□□ -0.11
SDC4-201ENST00000372733 NCOA6Q14686 2063 aaPredicted RBP14.33□□□□□ -0.12
SDC4-201ENST00000372733 ARG1P05089 322 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 CAMLGP49069 296 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 CSNK1EP49674 416 aaKnown RBP14.33□□□□□ -0.12
SDC4-201ENST00000372733 RRADP55042 308 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 RNF212Q495C1 297 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 OGFOD3Q6PK18 319 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 PLXDC1Q8IUK5 500 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 ZNF561Q8N587 486 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 PIGLQ9Y2B2 252 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 SPAG17Q6Q759 2223 aa14.33□□□□□ -0.12
SDC4-201ENST00000372733 ZNF726A6NNF4 738 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 DUX1O43812 170 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 DANCRP0C864 163 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 OR5H8P0DN80 308 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 CD27P26842 260 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 OPRM1P35372 400 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 CLDN17P56750 224 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 KCNMB1Q16558 191 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 FAM209BQ5JX69 171 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 CDCP2Q5VXM1 449 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 ADPRHL1Q8NDY3 354 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SLC25A43Q8WUT9 341 aaPredicted RBP14.32□□□□□ -0.12
SDC4-201ENST00000372733 TCEAL3Q969E4 200 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 ARV1Q9H2C2 271 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 PLEKHA2Q9HB19 425 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SDK1Q7Z5N4 2213 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 A0A1W2PPE2 198 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 RRP8O43159 456 aaKnown RBP14.32□□□□□ -0.12
SDC4-201ENST00000372733 DHRS3O75911 302 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 IGLV3-1P01715 115 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 OR5AC1P0C628 307 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 RAB5AP20339 215 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 HIST3H3Q16695 136 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SLC25A53Q5H9E4 307 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SLC16A14Q7RTX9 510 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 FAM24BQ8N5W8 94 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SLC38A9Q8NBW4 561 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 TSTD1Q8NFU3 115 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 OXGR1Q96P68 337 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 CHST5Q9GZS9 411 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 SEBOXQ9HB31 216 aaPredicted RBP14.32□□□□□ -0.12
SDC4-201ENST00000372733 ANXA10Q9UJ72 324 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 FBXO7Q9Y3I1 522 aa14.32□□□□□ -0.12
SDC4-201ENST00000372733 UMAD1C9J7I0 102 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 ANGPTL7O43827 346 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 HEXBP07686 556 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 DBHP09172 617 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 GLP1RP43220 463 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 FXYD4P59646 89 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 OR2B8PP59922 312 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 HNRNPKP61978 463 aaKnown RBP eCLIP14.31□□□□□ -0.12
SDC4-201ENST00000372733 TMEM176BQ3YBM2 270 aaPredicted RBP14.31□□□□□ -0.12
SDC4-201ENST00000372733 RPUSD3Q6P087 351 aaKnown RBP14.31□□□□□ -0.12
SDC4-201ENST00000372733 LYZL2Q7Z4W2 148 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 DYRK2Q92630 601 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 HAS2Q92819 552 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 REEP6Q96HR9 211 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 FAAP24Q9BTP7 215 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 C19orf12Q9NSK7 152 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 LUZP4Q9P127 313 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 ZMAT5Q9UDW3 170 aaKnown RBP14.31□□□□□ -0.12
SDC4-201ENST00000372733 ZDHHC8Q9ULC8 765 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 TRAV20A0A0B4J274 112 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 E5RGE8 158 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 TXNL1O43396 289 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 PRH1P02810 166 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 NQO2P16083 231 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 ECI1P42126 302 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 CHAF1BQ13112 559 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 LRRC18Q8N456 261 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 HSD17B11Q8NBQ5 300 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 CD300LFQ8TDQ1 290 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 RNF138Q8WVD3 245 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 Q96M66 194 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 TAAR9Q96RI9 348 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 GPR173Q9NS66 373 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 METTL1Q9UBP6 276 aaKnown RBP14.31□□□□□ -0.12
SDC4-201ENST00000372733 NSG2Q9Y328 171 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 V9GYS6 101 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 CFAP54Q96N23 3096 aa14.31□□□□□ -0.12
SDC4-201ENST00000372733 OR8U8P0C7N1 319 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 PRSS12P56730 875 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 PHLDA2Q53GA4 152 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 PHYHD1Q5SRE7 291 aa14.3□□□□□ -0.12
SDC4-201ENST00000372733 NXT1Q9UKK6 140 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms