RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 FBXL6Q8N531 539 aa5.78□□□□□ -1.48
UPF2-201ENST00000356352 TP53I13Q8NBR0 393 aaPredicted RBP5.78□□□□□ -1.48
UPF2-201ENST00000356352 OR5M9Q8NGP3 310 aa5.78□□□□□ -1.48
UPF2-201ENST00000356352 LRRC29Q8WV35 223 aa5.78□□□□□ -1.48
UPF2-201ENST00000356352 SPNS1Q9H2V7 528 aa5.78□□□□□ -1.48
UPF2-201ENST00000356352 RNF167Q9H6Y7 350 aa5.78□□□□□ -1.48
UPF2-201ENST00000356352 ZNF230Q9UIE0 474 aaPredicted RBP5.78□□□□□ -1.48
UPF2-201ENST00000356352 EXOGQ9Y2C4 368 aaKnown RBP5.78□□□□□ -1.48
UPF2-201ENST00000356352 SIAH2O43255 324 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 NDUFB6O95139 128 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TMIGD3P0DMS9 266 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 SFTPCP11686 197 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 HTR1DP28221 377 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MPLP40238 635 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 RAG2P55895 527 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TMEM183BQ1AE95 376 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TMEM241Q24JQ0 296 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 FNDC7Q5VTL7 733 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 FAAP20Q6NZ36 180 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 RNASEKQ6P5S7 137 aaKnown RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 SEC11CQ9BY50 192 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 NAA60Q9H7X0 242 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 IL20Q9NYY1 176 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 IL36GQ9NZH8 169 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 BOLA1Q9Y3E2 137 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TJP1Q07157 1748 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 ADAM20O43506 726 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CRISP2P16562 243 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PTGFRP43088 359 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 AANATQ16613 207 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 GUK1Q16774 197 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 LINC00303Q3SY05 128 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 SPICQ8N5J4 248 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TEX29Q8N6K0 151 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 SLC26A10Q8NG04 563 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 FGF14Q92915 247 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PERPQ96FX8 193 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 SF3B5Q9BWJ5 86 aaKnown RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 GPR87Q9BY21 358 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 AKIP1Q9NQ31 210 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 OR5V1Q9UGF6 321 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TMEM272A0A1B0GTI8 110 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 HMX2A2RU54 273 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PDCD6O75340 191 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 G0S2P27469 103 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CD200P41217 278 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CDC34P49427 236 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 RPL30P62888 115 aaKnown RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 TMEM267Q0VDI3 215 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 ACER2Q5QJU3 275 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 DHRS11Q6UWP2 260 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 BHLHA15Q7RTS1 189 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 PRSS3P2Q8NHM4 247 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 GSX1Q9H4S2 264 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 PSG11Q9UQ72 335 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 NUP98P52948 1817 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 FAM90A27PA6NNH2 459 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CLDN34H7C241 214 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CDX4O14627 284 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 IGHA1P01876 353 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 IGHA2P01877 340 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PMCHP20382 165 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PCMT1P22061 227 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 SLC6A1P30531 599 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 FGF9P31371 208 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 LIMK1P53667 647 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MLF1P58340 268 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 RBPMS2Q6ZRY4 209 aaKnown RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 SLC16A12Q6ZSM3 486 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MRGPREQ86SM8 312 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 LILRB1Q8NHL6 650 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 PHYHIPLQ96FC7 376 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 WDR89Q96FK6 387 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 TINAGL1Q9GZM7 467 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 VN1R1Q9GZP7 353 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 NAT8BQ9UHF3 227 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MAP1LC3B2A6NCE7 125 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 OOEPA6NGQ2 149 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TNFSF14O43557 240 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PLPP2O43688 288 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CIDEAO60543 219 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CDC14BO60729 498 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 DEDDO75618 318 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 ETHE1O95571 254 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 ACTL6AO96019 429 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 PNPP00491 289 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 OR5AL1P0C617 328 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CA6P23280 308 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 SURF2Q15527 256 aaPredicted RBP5.77□□□□□ -1.49
UPF2-201ENST00000356352 Q3ZCU0 254 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 DGAT2L7PQ6IED9 249 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 LINC00596Q86U02 117 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 CLRN3Q8NCR9 226 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 ZNF680Q8NEM1 530 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 OR4C5Q8NGB2 326 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MCHR2Q969V1 340 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 C4orf45Q96LM5 186 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 MAP1LC3BQ9GZQ8 125 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 TOLLIPQ9H0E2 274 aa5.77□□□□□ -1.49
UPF2-201ENST00000356352 OR2D2Q9H210 308 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms