RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SHPKQ9UHJ6 478 aa18.97■□□□□ 0.63
SHMT1-202ENST00000352886 FIGNL2A6NMB9 653 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 CA11O75493 328 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 SNTB1Q13884 538 aaKnown RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 PPA1Q15181 289 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 RSU1Q15404 277 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 STPG2Q8N412 459 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 ABHD3Q8WU67 409 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 ZNF845Q96IR2 970 aaPredicted RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 BARX1Q9HBU1 254 aaPredicted RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 TECTAO75443 2155 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 CNN3Q15417 329 aaKnown RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 ZNF528Q3MIS6 628 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 PLXDC2Q6UX71 529 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 RAB11FIP2Q7L804 512 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 FGFBP3Q8TAT2 258 aa18.96■□□□□ 0.63
SHMT1-202ENST00000352886 EMG1Q92979 244 aaKnown RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 RYDENQ9NUL5 291 aaKnown RBP18.96■□□□□ 0.63
SHMT1-202ENST00000352886 TRBV6-7A0A0A0MS04 114 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 H0YIZ8 118 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 KNG1P01042 644 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 RPS2P15880 293 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 TAF9Q16594 264 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 PAN3Q58A45 887 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 RPUSD3Q6P087 351 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 ZSCAN4Q8NAM6 433 aaPredicted RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 PSMF1Q92530 271 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 SHARPINQ9H0F6 387 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 METTL8Q9H825 291 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 TIMM10BQ9Y5J6 103 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 ATF4P18848 351 aaPredicted RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 KRTAP27-1Q3LI81 207 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 ELP2Q6IA86 826 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 SPINK14Q6IE38 97 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 MRPS24Q96EL2 167 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 RRNAD1Q96FB5 475 aaKnown RBP18.95■□□□□ 0.62
SHMT1-202ENST00000352886 OR2H1Q9GZK4 316 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 WNT5BQ9H1J7 359 aa18.95■□□□□ 0.62
SHMT1-202ENST00000352886 RBP2P50120 134 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 GFRA1P56159 465 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 SIGLEC14Q08ET2 396 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 RIPPLY2Q5TAB7 128 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 FAM122CQ6P4D5 195 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 CPNE4Q96A23 557 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 BORCS8Q96FH0 119 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 CPNE2Q96FN4 548 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 OR10C1Q96KK4 312 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 FAAP24Q9BTP7 215 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 GPR35Q9HC97 309 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 ZNF581Q9P0T4 197 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 CNR1P21554 472 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 SURF2Q15527 256 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 NAXEQ8NCW5 288 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 BHLHE23Q8NDY6 225 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 PIK3IP1Q96FE7 263 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 ZNF2Q9BSG1 426 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 MS4A7Q9GZW8 240 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 LRFN1Q9P244 771 aa18.94■□□□□ 0.62
SHMT1-202ENST00000352886 C14orf166Q9Y224 244 aaKnown RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 MRPS18CQ9Y3D5 142 aaKnown RBP18.94■□□□□ 0.62
SHMT1-202ENST00000352886 TEX13DA0A0J9YY54 714 aaPredicted RBP18.93■□□□□ 0.62
SHMT1-202ENST00000352886 MSTNO14793 375 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 CYTIPO60759 359 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 NRASP01111 189 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 PPIAP62937 165 aaKnown RBP18.93■□□□□ 0.62
SHMT1-202ENST00000352886 FOXO1Q12778 655 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 SKA3Q8IX90 412 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 THOC3Q96J01 351 aaKnown RBP18.93■□□□□ 0.62
SHMT1-202ENST00000352886 STRADBQ9C0K7 418 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 DNTTIP1Q9H147 329 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 TAS2R3Q9NYW6 316 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 IGHV3-9P01782 118 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 JMJD7P0C870 316 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 NSUN5P2Q63ZY6 315 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 DEFB123Q8N688 67 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 TAAR9Q96RI9 348 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 ZPBPQ9BS86 351 aa18.93■□□□□ 0.62
SHMT1-202ENST00000352886 PCBD1P61457 104 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 ZNF92Q03936 586 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 BTN1A1Q13410 526 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 LHFPL2Q6ZUX7 228 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 FAM219AQ8IW50 185 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 OR5AC2Q9NZP5 309 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 AK3Q9UIJ7 227 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 HOXB5P09067 269 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 IL32P24001 234 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 PTGER4P35408 488 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 FAM3AP98173 230 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 TMEM42Q69YG0 159 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 DBX2Q6ZNG2 339 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 LHFPL5Q8TAF8 219 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 ANXA10Q9UJ72 324 aa18.92■□□□□ 0.62
SHMT1-202ENST00000352886 BOKQ9UMX3 212 aaPredicted RBP18.92■□□□□ 0.62
SHMT1-202ENST00000352886 hCG_38984A0A1B0GV85 526 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 F8VVB4 439 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 F8VWA3 439 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 BET1O15155 118 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 RRP8O43159 456 aaKnown RBP18.91■□□□□ 0.62
SHMT1-202ENST00000352886 RFC3P40938 356 aa18.91■□□□□ 0.62
SHMT1-202ENST00000352886 RRADP55042 308 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms