RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NUDT14O95848 222 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 CTSDP07339 412 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 ZNF20P17024 532 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 RELQ04864 619 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 USF2Q15853 346 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 CHRFAM7AQ494W8 412 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 TSPO2Q5TGU0 170 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 FAM89BQ8N5H3 189 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 METTL27Q8N6F8 245 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 MRPL43Q8N983 215 aaKnown RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 ZFP62Q8NB50 900 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 OR5D18Q8NGL1 313 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 SSC4DQ8WTU2 575 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 ASB10Q8WXI3 467 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 HDHD3Q9BSH5 251 aaPredicted RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 NDUFAF3Q9BU61 184 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 PECRQ9BY49 303 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 OR10A2Q9H208 303 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 SIRT7Q9NRC8 400 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 HRASLS2Q9NWW9 162 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 MCTS1Q9ULC4 181 aaKnown RBP5.96□□□□□ -1.46
VPS39-202ENST00000348544 HSF4Q9ULV5 492 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 TMEM131Q92545 1883 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 PTPRSQ13332 1948 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 CCDC187A0A096LP49 1063 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 TMED7-TICAM2A0A0A6YYA0 188 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 NSG1A0A0A6YYJ2 146 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 SMCO3A2RU48 225 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 CDC14CA4D256 554 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 SCAF4O95104 1147 aaKnown RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 ADH1BP00325 375 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 GLI4P10075 376 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 MDKP21741 143 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 RGS19P49795 217 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 SLC37A1P57057 533 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 RAB4BP61018 213 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 TMEM187Q14656 261 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 JOSD1Q15040 202 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 AKR1C8PQ5T2L2 129 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 GPR157Q5UAW9 335 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 OR51T1Q8NGJ9 327 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 OR6X1Q8NH79 312 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 GPR119Q8TDV5 335 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 C11orf40Q8WZ69 217 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 TVP23CQ96ET8 276 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 RCC1LQ96I51 464 aaKnown RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 FAM210BQ96KR6 192 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 KCNK17Q96T54 332 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 MED29Q9NX70 200 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 CDH23Q9H251 3354 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 FTCDNL1E5RQL4 147 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 MS4A18H0YCH9 400 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 ADAM10O14672 748 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 GEMIN2O14893 280 aaKnown RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 PLRG1O43660 514 aaKnown RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 AMBPP02760 352 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 HCKP08631 526 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 DBHP09172 617 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 OR5AC1P0C628 307 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 GIMD1P0DJR0 217 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 SFTPCP11686 197 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 FUT3P21217 361 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 ATP6V0CP27449 155 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 BLVRBP30043 206 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 SLC6A8P48029 635 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 FOXF1Q12946 379 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 FZD2Q14332 565 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 MS4A18Q3C1V0 323 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 OR2G3Q8NGZ4 309 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 DECR2Q9NUI1 292 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 ZNF701Q9NV72 531 aaPredicted RBP5.95□□□□□ -1.46
VPS39-202ENST00000348544 KIAA1456Q9P272 454 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 PADI1Q9ULC6 663 aa5.95□□□□□ -1.46
VPS39-202ENST00000348544 A0A087WZY1 265 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 C5orf63A6NC05 138 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 C17orf105B2RV13 164 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ZNF878C9JN71 531 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 GP1BBP13224 206 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 MYOGP15173 224 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ZNF43P17038 809 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 FGF7P21781 194 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 G0S2P27469 103 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 CSNK1A1P48729 337 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 PIGPP57054 158 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 EWSR1Q01844 656 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS39-202ENST00000348544 TNFRSF9Q07011 255 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 PRTGQ2VWP7 1150 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ZNF506Q5JVG8 444 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 TCEAL6Q6IPX3 200 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 KLHL24Q6TFL4 600 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 ABHD12BQ7Z5M8 362 aaPredicted RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 SPRED2Q7Z698 418 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 OR8B12Q8NGG6 310 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 STT3BQ8TCJ2 826 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 PTPMT1Q8WUK0 201 aaPredicted RBP5.94□□□□□ -1.46
VPS39-202ENST00000348544 TMEM171Q8WVE6 324 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 BOD1Q96IK1 185 aa5.94□□□□□ -1.46
VPS39-202ENST00000348544 FAM71F1Q96KD3 344 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms