RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 IGKV1-12A0A0C4DH73 117 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 LNP1A1A4G5 178 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 B8ZZF3 427 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 CYTIPO60759 359 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 NEURL1O76050 574 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 IGKV1D-12P01611 117 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 PGAM2P15259 253 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 CNR1P21554 472 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF92Q03936 586 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF528Q3MIS6 628 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 EMG1Q92979 244 aaKnown RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 SPSB1Q96BD6 273 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 OR10C1Q96KK4 312 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 FAAP24Q9BTP7 215 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 LIME1Q9H400 295 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 MRPS18CQ9Y3D5 142 aaKnown RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF407Q9C0G0 2248 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 BDP1A6H8Y1 2624 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF587BE7ETH6 402 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 ZNHIT1O43257 154 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 SERPINA5P05154 406 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 NUP62P37198 522 aaPredicted RBP13.41□□□□□ -0.26
UPF3B-202ENST00000345865 RRADP55042 308 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 FAM3AP98173 230 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 CHRFAM7AQ494W8 412 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 RIPPLY2Q5TAB7 128 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 TMEM42Q69YG0 159 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 UNQ6126/PRO20091Q6UXV3 157 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 MOB3CQ70IA8 216 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 TMEM17Q86X19 198 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 NAXEQ8NCW5 288 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 PXT1Q8NFP0 134 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 TIMM10BQ9Y5J6 103 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 TRBV6-7A0A0A0MS04 114 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 HOXD4P09016 255 aaPredicted RBP13.41□□□□□ -0.26
UPF3B-202ENST00000345865 JMJD7P0C870 316 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 TSPO2Q5TGU0 170 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 BRICD5Q6PL45 260 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 HSD17B13Q7Z5P4 300 aaPredicted RBP13.41□□□□□ -0.26
UPF3B-202ENST00000345865 INO80EQ8NBZ0 244 aaPredicted RBP13.41□□□□□ -0.26
UPF3B-202ENST00000345865 METTL9Q9H1A3 318 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 RAB18Q9NP72 206 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 DNAJC13O75165 2243 aa13.41□□□□□ -0.26
UPF3B-202ENST00000345865 CA11O75493 328 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 MMP7P09237 267 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 RSU1Q15404 277 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 EIF4E3Q8N5X7 224 aaKnown RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 CPEB3Q8NE35 698 aaKnown RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 DCUN1D4Q92564 292 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 DYRK2Q92630 601 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 CPNE4Q96A23 557 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 MS4A7Q9GZW8 240 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 AK3Q9UIJ7 227 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 LOC400499M0QZD8 3231 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 A0A0B4J2A0 478 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 hCG_38984A0A1B0GV85 526 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 MSGN1A6NI15 193 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 F5H0A9 414 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 TERTO14746 1132 aaKnown RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF205O95201 554 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 KNG1P01042 644 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 NRASP01111 189 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF883P0CG24 379 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 EDN3P14138 238 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 PTGER4P35408 488 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 RBP2P50120 134 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 SRYQ05066 204 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 CDCP2Q5VXM1 449 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 MRPS24Q96EL2 167 aaKnown RBP13.4□□□□□ -0.26
UPF3B-202ENST00000345865 SCGB3A2Q96PL1 93 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 ZPBPQ9BS86 351 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 STRADBQ9C0K7 418 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 SHARPINQ9H0F6 387 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 OR5AC2Q9NZP5 309 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 SHPKQ9UHJ6 478 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 SPEF1Q9Y4P9 236 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 ASPMQ8IZT6 3477 aa13.4□□□□□ -0.26
UPF3B-202ENST00000345865 CSTBP04080 98 aaKnown RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 PIGYQ3MUY2 71 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 ASCL4Q6XD76 172 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 ZBTB44Q8NCP5 570 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 OR2M7Q8NG81 312 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 BORCS8Q96FH0 119 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 ARPC5LQ9BPX5 153 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 SULT4A1Q9BR01 284 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF2Q9BSG1 426 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 DDA1Q9BW61 102 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 SESN1Q9Y6P5 492 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 GEMIN2O14893 280 aaKnown RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 SIGLEC5O15389 551 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 SFTPBP07988 381 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 OPRM1P35372 400 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 LHX2P50458 406 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 FOXG1P55316 489 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 PPA1Q15181 289 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 CNN3Q15417 329 aaKnown RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 PABPC1L2AQ5JQF8 200 aa13.39□□□□□ -0.27
UPF3B-202ENST00000345865 ZNF703Q9H7S9 590 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-202ENST00000345865 TEX13DA0A0J9YY54 714 aaPredicted RBP13.38□□□□□ -0.27
UPF3B-202ENST00000345865 KRBOX1C9JBD0 128 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms