RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AMDHD2Q9Y303 409 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 FOXI3A8MTJ6 420 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF732B4DXR9 585 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 ARPC1BO15143 372 aaKnown RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 NDUFB6O95139 128 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 BMP5P22003 454 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 HAAOP46952 286 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 EIF2B2P49770 351 aaKnown RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 UCP2P55851 309 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 ARFRP1Q13795 201 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 FBXW12Q6X9E4 464 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 OR6F1Q8NGZ6 308 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 SLC25A40Q8TBP6 338 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 DACT3Q96B18 629 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 PECRQ9BY49 303 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF107Q9UII5 783 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 EEF1E1-BLOC1S5C9J1V9 151 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 PEX14O75381 377 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 SFTPBP07988 381 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 CA6P23280 308 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 RAG2P55895 527 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 CBX3Q13185 183 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 RBMS2Q15434 407 aaKnown RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 TAF9Q16594 264 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 PNLIPRP3Q17RR3 467 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 NKAPLQ5M9Q1 402 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 OR52W1Q6IF63 320 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 BATF2Q8N1L9 274 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 OSR2Q8N2R0 312 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 GINS4Q9BRT9 223 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 TINAGL1Q9GZM7 467 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-202ENST00000339872 IL36GQ9NZH8 169 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 TUBD1Q9UJT1 453 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 MPC1Q9Y5U8 109 aa11.49□□□□□ -0.57
HMGB1-202ENST00000339872 C7orf66A4D0T2 115 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 IGLV1-44P01699 117 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 AMY2AP04746 511 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 CSN2P05814 226 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF35P13682 527 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 RRAS2P62070 204 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-202ENST00000339872 PIGYQ3MUY2 71 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ALKBH2Q6NS38 261 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 OR5A2Q8NGI9 324 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 OR5P3Q8WZ94 311 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 S100PBPQ96BU1 408 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF221Q9UK13 617 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 SLC25A15Q9Y619 301 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 IGHV1-18A0A0C4DH31 117 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 A0A0G2JNJ9 132 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 CD74P04233 296 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 OPRM1P35372 400 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ATAD3CQ5T2N8 411 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 NCCRP1Q6ZVX7 275 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-202ENST00000339872 C6orf201Q7Z4U5 140 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 FBXL14Q8N1E6 418 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ZSCAN4Q8NAM6 433 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-202ENST00000339872 BEST4Q8NFU0 473 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 SLAMF9Q96A28 289 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 GHITMQ9H3K2 345 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.48□□□□□ -0.57
HMGB1-202ENST00000339872 PLEKHJ1Q9NW61 149 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 Q9UFV3 132 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF835Q9Y2P0 537 aa11.48□□□□□ -0.57
HMGB1-202ENST00000339872 ESPL1Q14674 2120 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 MSTNO14793 375 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 NPBWR2P48146 333 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 CD83Q01151 205 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 NKPD1Q17RQ9 610 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 RNASE10Q5GAN6 216 aaKnown RBP11.47□□□□□ -0.57
HMGB1-202ENST00000339872 TIMM23BQ5SRD1 257 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 BPIFB2Q8N4F0 458 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 ST8SIA4Q92187 359 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 ST6GAL2Q96JF0 529 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 PCDHB16Q9NRJ7 776 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF581Q9P0T4 197 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 ST3GAL6Q9Y274 331 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 DSPP15924 2871 aaKnown RBP11.47□□□□□ -0.57
HMGB1-202ENST00000339872 PRR14LQ5THK1 2151 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 IGHV2OR16-5A0A0B4J2B6 119 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 SERPINE3A8MV23 424 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 GEMIN2O14893 280 aaKnown RBP11.47□□□□□ -0.57
HMGB1-202ENST00000339872 RAC2P15153 192 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 MPV17P39210 176 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 RBPJQ06330 500 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 ARL6IP1Q15041 203 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 SIGIRRQ6IA17 410 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 UNQ6126/PRO20091Q6UXV3 157 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 KLF14Q8TD94 323 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-202ENST00000339872 SNAPC3Q92966 411 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 MRPS24Q96EL2 167 aaKnown RBP11.47□□□□□ -0.57
HMGB1-202ENST00000339872 RADILQ96JH8 1075 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 OR51J1Q9H342 316 aa11.47□□□□□ -0.57
HMGB1-202ENST00000339872 OR5B21A6NL26 309 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 A8MXE2 369 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 PYCARD-AS1I3L0S3 204 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 ANXA7P20073 488 aaKnown RBP11.46□□□□□ -0.57
HMGB1-202ENST00000339872 BCL3P20749 454 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 HRH1P35367 487 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 RAD52P43351 418 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF83P51522 516 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms