RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SLC35B4Q969S0 331 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 SEH1LQ96EE3 360 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 DYNLL2Q96FJ2 89 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 RNF170Q96K19 258 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ACBD6Q9BR61 282 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 NDFIP1Q9BT67 221 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CHAC1Q9BUX1 264 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 BBS2Q9BXC9 721 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CHRNA10Q9GZZ6 450 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MRM3Q9HC36 420 aaKnown RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 ANKHQ9HCJ1 492 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM9BQ9NQ34 198 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MCUBQ9NWR8 336 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 STMN3Q9NZ72 180 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF282Q9UDV7 671 aaPredicted RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 PRELID1Q9Y255 219 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 TIMM22Q9Y584 194 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 KIF26AQ9ULI4 1882 aaPredicted RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 SPTBN2O15020 2390 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 RGPD2P0DJD1 1756 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MAST2Q6P0Q8 1798 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 HELZ2Q9BYK8 2649 aaKnown RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 BPTFQ12830 3046 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 TECTAO75443 2155 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 C2CD3Q4AC94 2353 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ANKRD12Q6UB98 2062 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 GOLGA8QA0A0J9YX86 632 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1B0GVG6 124 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 LRCOL1A6NCL2 159 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 NCBP2LA6PVI3 153 aaKnown RBP1.99□□□□□ -2.09
HMGB1-201ENST00000326004 H3BN98 237 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 NME4O00746 187 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 B4GALT5O43286 388 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ERI3O43414 337 aaKnown RBP1.99□□□□□ -2.09
HMGB1-201ENST00000326004 RAD51CO43502 376 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 GABARAPO95166 117 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PLEKHA8P1O95397 391 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CTDNEP1O95476 244 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 HLA-DPB1P04440 258 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CISD3P0C7P0 127 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 IGHV1-8P0DP01 117 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PRPS2P11908 318 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PSMC3P17980 439 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 RAB3BP20337 219 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 HTR2CP28335 458 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 KCNJ3P48549 501 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 TUFMP49411 452 aaKnown RBP1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CLDN6P56747 220 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CTAG1AP78358 180 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 SEMG2Q02383 582 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 STX3Q13277 289 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 SLC39A6Q13433 755 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ART3Q13508 389 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 USF2Q15853 346 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-201ENST00000326004 TPTE2P1Q5T6R2 138 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 LCE3AQ5TA76 89 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 UBE2UQ5VVX9 321 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 NANOGP8Q6NSW7 305 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 MBOAT2Q6ZWT7 520 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 SPATA24Q86W54 205 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 LRRC8AQ8IWT6 810 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 SYS1Q8N2H4 156 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ARRDC1Q8N5I2 433 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 OR4D6Q8NGJ1 314 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 OR5AR1Q8NGP9 310 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CLHC1Q8NHS4 586 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 OR8D1Q8WZ84 308 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 RPEQ96AT9 228 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PPP1R14BQ96C90 147 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 NRBF2Q96F24 287 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CPB2Q96IY4 423 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ALS2CR12Q96Q35 445 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 SLC25A2Q9BXI2 301 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 YIPF3Q9GZM5 350 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 FAM107BQ9H098 131 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 OR52A5Q9H2C5 316 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 VCX3BQ9H321 246 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 FAM49BQ9NUQ9 324 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 CD300AQ9UGN4 299 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 GGA2Q9UJY4 613 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PYCARDQ9ULZ3 195 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 PSG8Q9UQ74 426 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 POFUT2Q9Y2G5 429 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 MRPS18BQ9Y676 258 aaKnown RBP1.99□□□□□ -2.09
HMGB1-201ENST00000326004 MYO9BQ13459 2157 aa1.99□□□□□ -2.09
HMGB1-201ENST00000326004 ASPMQ8IZT6 3477 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1W2PP64 1363 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 RTL9Q8NET4 1388 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 SCN1AP35498 2009 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 MYO15AQ9UKN7 3530 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 C2orf16Q68DN1 1984 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CNOT1A5YKK6 2376 aaKnown RBP1.98□□□□□ -2.09
HMGB1-201ENST00000326004 CACNA1HO95180 2353 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 IGLV1-50A0A075B6I6 118 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 IGHV5-10-1A0A0J9YXX1 117 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1B0GVX0 72 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1B0GW15 77 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1W2PP18 115 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 GOLGA6L4A6NEF3 574 aa1.98□□□□□ -2.09
HMGB1-201ENST00000326004 E7EWF7 191 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms