RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 RBP2P50120 134 aa7.12□□□□□ -1.27
CIITA-201ENST00000324288 ERHP84090 104 aaKnown RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 RPL18Q07020 188 aaKnown RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 GGTA1PQ4G0N0 100 aa7.12□□□□□ -1.27
CIITA-201ENST00000324288 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 RTN4RL1Q86UN2 441 aaPredicted RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 ZCCHC14Q8WYQ9 949 aaKnown RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 ALKBH3Q96Q83 286 aaPredicted RBP7.12□□□□□ -1.27
CIITA-201ENST00000324288 ITGB4P16144 1822 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CAMPP49913 170 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CDK5R1Q15078 307 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 HLA-DRB5Q30154 266 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 LRP6O75581 1613 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TCRBV5S2A0A599 114 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SELEP16581 610 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 ABHD17CQ6PCB6 329 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 RNF2Q99496 336 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SRD5A3Q9H8P0 318 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TREM2Q9NZC2 230 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 LRRC37A3O60309 1634 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 IFITM5A6NNB3 132 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 RPS19BP1Q86WX3 136 aaKnown RBP7.11□□□□□ -1.27
CIITA-201ENST00000324288 FAAP24Q9BTP7 215 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CDCA4Q9BXL8 241 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 PLEKHA2Q9HB19 425 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 GCSHP23434 173 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CD1BP29016 333 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SULT1A1P50225 295 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 FAM71E1Q6IPT2 247 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TCTEX1D1Q8N7M0 179 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CCL4L1Q8NHW4 92 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SLIRPQ9GZT3 109 aaKnown RBP7.11□□□□□ -1.27
CIITA-201ENST00000324288 HES4Q9HCC6 221 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 HMGN4O00479 90 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TNFRSF10CO14798 259 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 POU3F3P20264 500 aaPredicted RBP7.11□□□□□ -1.27
CIITA-201ENST00000324288 ADPRHP54922 357 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SLC38A11Q08AI6 406 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TOMM34Q15785 309 aaPredicted RBP7.11□□□□□ -1.27
CIITA-201ENST00000324288 RPEL1Q2QD12 228 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 OR2T6Q8NHC8 308 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SMIM19Q96E16 107 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 GPR137Q96N19 417 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 MMP9P14780 707 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CD96P40200 585 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 GNG4P50150 75 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 C17orf99Q6UX52 265 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 OR4C12Q96R67 309 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 MMACHCQ9Y4U1 282 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 ARHGAP32A7KAX9 2087 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 LAMB1P07942 1786 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 M0R135 149 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 MASP2O00187 686 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 HIST3H3Q16695 136 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 UQCC3Q6UW78 93 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 BTNL3Q6UXE8 466 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 ZDHHC23Q8IYP9 409 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 OR1L6Q8NGR2 347 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 ZNF799Q96GE5 643 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 WSB1Q9Y6I7 421 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 FAM24AA6NFZ4 105 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 PRRG2O14669 202 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TMEM38AQ9H6F2 299 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 CSPG4Q6UVK1 2322 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 KIR2DS1A0A191URI9 304 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 A6NDN8 102 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 IDSB3KWA1 339 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 TMPRSS11DO60235 418 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 LIMS3P0CW19 117 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 LIMS4P0CW20 117 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 KIR2DS4P43632 304 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 KIR2DS1Q14954 304 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 EXD3Q8N9H8 876 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 MZB1Q8WU39 189 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 FAM131CQ96AQ9 280 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 AP5S1Q9NUS5 200 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 R4GMQ9 66 aa7.11□□□□□ -1.27
CIITA-201ENST00000324288 SEMA7AO75326 666 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 CRYBA1P05813 215 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 RNASE1P07998 156 aaKnown RBP7.1□□□□□ -1.27
CIITA-201ENST00000324288 PKIAP61925 76 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 RIMKLAQ8IXN7 391 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 OR2M3Q8NG83 312 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 TTC9Q92623 222 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 DUSP21Q9H596 190 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 SNCGO76070 127 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 FAHP16930 419 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 CLN3Q13286 438 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 C5orf46Q6UWT4 87 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 TMEM251Q8N6I4 163 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 IGKV6D-21A0A0A0MT36 114 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 A0A1W2PR48 441 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 HMX2A2RU54 273 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 F12P00748 615 aaPredicted RBP7.1□□□□□ -1.27
CIITA-201ENST00000324288 SLC35E4Q6ICL7 350 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 GALNT16Q8N428 558 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 CPEB3Q8NE35 698 aaKnown RBP7.1□□□□□ -1.27
CIITA-201ENST00000324288 ZNF576Q9H609 170 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 MARCH5Q9NX47 278 aa7.1□□□□□ -1.27
CIITA-201ENST00000324288 A0A1W2PRD5 423 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms