RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MMACHCQ9Y4U1 282 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SDK1Q7Z5N4 2213 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 LTBP2Q14767 1821 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 A0A1W2PQU0 124 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 DHRS7CA6NNS2 312 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 IFNA10P01566 189 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 CD55P08174 381 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SRP19P09132 144 aaKnown RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 ZNF823P16415 610 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 P2RY1P47900 373 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 FOXK1P85037 733 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SPSB3Q6PJ21 355 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SGPP2Q8IWX5 399 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 SLC22A18Q96BI1 424 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 CCDC3Q9BQI4 270 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 EMC6Q9BV81 110 aa11.86□□□□□ -0.51
SKA3-201ENST00000298260 C14orf166Q9Y224 244 aaKnown RBP11.86□□□□□ -0.51
SKA3-201ENST00000298260 BORCS7-ASMTA0A0B4J1R7 106 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 ADAM10O14672 748 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 AMBPP02760 352 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 OR4A8P0C604 315 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 ZNF117Q03924 483 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 GLO1Q04760 184 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 PRSS8Q16651 343 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 CHRFAM7AQ494W8 412 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 PHLDA2Q53GA4 152 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 COL13A1Q5TAT6 717 aaPredicted RBP11.85□□□□□ -0.51
SKA3-201ENST00000298260 OR2G3Q8NGZ4 309 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 OR1E3Q8WZA6 343 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 GINS3Q9BRX5 216 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 NDUFAF3Q9BU61 184 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 CYP8B1Q9UNU6 501 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 C5orf63A6NC05 138 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 FAM24AA6NFZ4 105 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 TLCD2A6NGC4 264 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 K7N7A8 449 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 ONECUT2O95948 504 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 MBP02144 154 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 TBPP20226 339 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 LMO1P25800 156 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 HSD11B1P28845 292 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 RRADP55042 308 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 FXYD4P59646 89 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 RELQ04864 619 aaPredicted RBP11.85□□□□□ -0.51
SKA3-201ENST00000298260 GAB4Q2WGN9 574 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 TMEM31Q5JXX7 168 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 HIST2H3PS2Q5TEC6 136 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 MAMDC2Q7Z304 686 aaPredicted RBP11.85□□□□□ -0.51
SKA3-201ENST00000298260 SULF2Q8IWU5 870 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 OR51T1Q8NGJ9 327 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 ZNF519Q8TB69 540 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 HOXB13Q92826 284 aaPredicted RBP11.85□□□□□ -0.51
SKA3-201ENST00000298260 NXF5Q9H1B4 397 aaKnown RBP11.85□□□□□ -0.51
SKA3-201ENST00000298260 ZNF319Q9P2F9 582 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 SLC17A4Q9Y2C5 497 aa11.85□□□□□ -0.51
SKA3-201ENST00000298260 C2orf72A6NCS6 295 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 NPSP0C0P6 89 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 OR5AC1P0C628 307 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 C6orf201Q7Z4U5 140 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 COMMD1Q8N668 190 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 NECAP1Q8NC96 275 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 LIPHQ8WWY8 451 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 GAL3ST4Q96RP7 486 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 HDAC8Q9BY41 377 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 PBOV1Q9GZY1 135 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 ARV1Q9H2C2 271 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 CUTCQ9NTM9 273 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 IL17BQ9UHF5 180 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 PIAS3Q9Y6X2 628 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 KIAA2026Q5HYC2 2103 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 PRSS38A1L453 326 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 PRR19A6NJB7 356 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 CEACAM18A8MTB9 384 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 SCDO00767 359 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 UTS2O95399 124 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 KLF8O95600 359 aaPredicted RBP11.84□□□□□ -0.51
SKA3-201ENST00000298260 CNOT4O95628 575 aaKnown RBP11.84□□□□□ -0.51
SKA3-201ENST00000298260 IFNA21P01568 189 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 HPNP05981 417 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 DBHP09172 617 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 BLVRBP30043 206 aaPredicted RBP11.84□□□□□ -0.51
SKA3-201ENST00000298260 GPR3P46089 330 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 CST6Q15828 149 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 C2orf27AQ580R0 203 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 TANGO2Q6ICL3 276 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 BRICD5Q6PL45 260 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 MRPL43Q8N983 215 aaKnown RBP11.84□□□□□ -0.51
SKA3-201ENST00000298260 ADAMTS18Q8TE60 1221 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 NUDT22Q9BRQ3 303 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 APOOQ9BUR5 198 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 MAGT1Q9H0U3 335 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 ELL3Q9HB65 397 aaPredicted RBP11.84□□□□□ -0.51
SKA3-201ENST00000298260 KCNIP3Q9Y2W7 256 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 WSB1Q9Y6I7 421 aa11.84□□□□□ -0.51
SKA3-201ENST00000298260 EPOPA6NHQ4 379 aa11.83□□□□□ -0.52
SKA3-201ENST00000298260 ATP6V0CP27449 155 aa11.83□□□□□ -0.52
SKA3-201ENST00000298260 OPRM1P35372 400 aa11.83□□□□□ -0.52
SKA3-201ENST00000298260 ICAM4Q14773 271 aa11.83□□□□□ -0.52
SKA3-201ENST00000298260 TCEAL6Q6IPX3 200 aa11.83□□□□□ -0.52
SKA3-201ENST00000298260 ABHD12BQ7Z5M8 362 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms