RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF705AQ6ZN79 300 aaPredicted RBP17.08■□□□□ 0.32
UPF1-201ENST00000262803 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.08■□□□□ 0.32
UPF1-201ENST00000262803 SLC45A2Q9UMX9 530 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 TRAV38-1A0A0B4J264 116 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 BCL2L11O43521 198 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 ATP6V1FQ16864 119 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 Q56UQ5 140 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 ZNF547Q8IVP9 402 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 APOBEC4Q8WW27 367 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 ASB5Q8WWX0 329 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 SMIM7Q9BQ49 75 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 J3QR89 54 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 EPPINO95925 133 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 S100A4P26447 101 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 ID4P47928 161 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 ZBTB37Q5TC79 503 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 GLDNQ6ZMI3 551 aaPredicted RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 OR5AP2Q8NGF4 316 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 OR1L4Q8NGR5 311 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 BCL2L2Q92843 193 aaPredicted RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 TM4SF19Q96DZ7 209 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 RAB18Q9NP72 206 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 DNAJB12Q9NXW2 375 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 RCL1Q9Y2P8 373 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 RNASEK-C17orf49H0YIS7 233 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 AQP8O94778 261 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 CTGFP29279 349 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 PRICKLE4Q2TBC4 344 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 PTPRZ1P23471 2315 aaPredicted RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 G3V3Q6 166 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 PPIHO43447 177 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 ZFPL1O95159 310 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 PTHLHP12272 177 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 CDAP32320 146 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 NCR3LG1Q68D85 454 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 SIGLECL1Q8N7X8 197 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 OR5M9Q8NGP3 310 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 C1RLQ9NZP8 487 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 LPAR3Q9UBY5 353 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 LSM2Q9Y333 95 aaKnown RBP17.07■□□□□ 0.32
UPF1-201ENST00000262803 V9GYS6 101 aa17.07■□□□□ 0.32
UPF1-201ENST00000262803 DCTN6O00399 190 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 MYF5P13349 255 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 TEX261Q6UWH6 196 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 PRSS41Q7RTY9 318 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 U3KQ87 197 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 HES3Q5TGS1 186 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 SLC24A4Q8NFF2 622 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 MAP6Q96JE9 813 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 RFC3P40938 356 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 OR2Y1Q8NGV0 311 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 ADGRG7Q96K78 797 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 TINAGL1Q9GZM7 467 aaPredicted RBP17.06■□□□□ 0.32
UPF1-201ENST00000262803 ZNF83P51522 516 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 C21orf58P58505 322 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 WDR38Q5JTN6 314 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 TMEM123Q8N131 208 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 C2CD4CQ8TF44 421 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 TMPRSS5Q9H3S3 457 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 LHX9Q9NQ69 397 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 UQCC1Q9NVA1 299 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 HOXB3P14651 431 aaPredicted RBP17.06■□□□□ 0.32
UPF1-201ENST00000262803 RAC3P60763 192 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 RANP62826 216 aaKnown RBP17.06■□□□□ 0.32
UPF1-201ENST00000262803 PRDX4Q13162 271 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 TCTN1Q2MV58 587 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 OR6X1Q8NH79 312 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 OR10D3Q8NH80 312 aa17.06■□□□□ 0.32
UPF1-201ENST00000262803 EXOGQ9Y2C4 368 aaKnown RBP17.06■□□□□ 0.32
UPF1-201ENST00000262803 ARID1AO14497 2285 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 DNPH1O43598 174 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 TVP23CQ96ET8 276 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 COX14Q96I36 57 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 PPP1CBP62140 327 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 PLA2G3Q9NZ20 509 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 SCO1O75880 301 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 HOXD4P09016 255 aaPredicted RBP17.05■□□□□ 0.32
UPF1-201ENST00000262803 SLC25A4P12235 298 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 ZFP62Q8NB50 900 aaPredicted RBP17.05■□□□□ 0.32
UPF1-201ENST00000262803 ZBTB44Q8NCP5 570 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 SIRT3Q9NTG7 399 aaPredicted RBP17.05■□□□□ 0.32
UPF1-201ENST00000262803 NDUFB6O95139 128 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 WNT1P04628 370 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 TRILQ7L0X0 811 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 ADGRL4Q9HBW9 690 aa17.05■□□□□ 0.32
UPF1-201ENST00000262803 TRIM77I1YAP6 450 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 ACSM4P0C7M7 580 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 BMP5P22003 454 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 TIAL1Q01085 375 aaKnown RBP eCLIP17.04■□□□□ 0.32
UPF1-201ENST00000262803 KLHDC1Q8N7A1 406 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 HYAL3O43820 417 aaPredicted RBP17.04■□□□□ 0.32
UPF1-201ENST00000262803 AVPR2P30518 371 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 AANATQ16613 207 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 UQCC3Q6UW78 93 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 BHLHA15Q7RTS1 189 aaPredicted RBP17.04■□□□□ 0.32
UPF1-201ENST00000262803 OR8B3Q8NGG8 313 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 OR8B2Q96RD0 313 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 CRISPLD2Q9H0B8 497 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 C5orf67F2Z3F1 127 aa17.04■□□□□ 0.32
UPF1-201ENST00000262803 SPRY1O43609 319 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms