RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 HOXC4P09017 264 aaPredicted RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 C1GALT1C1LP0DN25 315 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF35P13682 527 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 HIST1H1CP16403 213 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 MGMTP16455 207 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SDC4P31431 198 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 DDOSTP39656 456 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SERPINB10P48595 397 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 DAP3P51398 398 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 CRYBA4P53673 196 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SNAP25P60880 206 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 RAB2AP61019 212 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 GTF2BQ00403 316 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SLC10A7Q0GE19 358 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 BIKQ13323 160 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR5I1Q13606 314 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 APOFQ13790 326 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 MPPED2Q15777 294 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 IL17AQ16552 155 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TRMT5Q32P41 509 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 RFX4Q33E94 735 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TMEM176BQ3YBM2 270 aaPredicted RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 KLF17Q5JT82 389 aaPredicted RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 LCE3EQ5T5B0 92 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SPNS3Q6ZMD2 512 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TMEM179Q6ZVK1 233 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 AHSA2Q719I0 299 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 GRINAQ7Z429 371 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TMEM144Q7Z5S9 345 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TMEM179BQ7Z7N9 219 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 MRPL52Q86TS9 123 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SMG6Q86US8 1419 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 THOC6Q86W42 341 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TGIF2LYQ8IUE0 185 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 C2orf73Q8N5S3 287 aaPredicted RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 LFNGQ8NES3 379 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR11H1Q8NG94 326 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR8J3Q8NGG0 315 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR1S2Q8NGQ3 325 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR11H2Q8NH07 326 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR56B4Q8NH76 319 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 C1orf54Q8WWF1 131 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 OR8D1Q8WZ84 308 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 WDR34Q96EX3 536 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 EBF4Q9BQW3 602 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 FAIM2Q9BWQ8 316 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 ACTR6Q9GZN1 396 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TMEM38AQ9H6F2 299 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 PTGES2Q9H7Z7 377 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 ZDHHC11Q9H8X9 412 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TPT1P8Q9HAU6 139 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 PDFQ9HBH1 243 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 C6orf50Q9HD87 102 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SPANXB1Q9NS25 103 aaPredicted RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 LGALS13Q9UHV8 139 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 LSM7Q9UK45 103 aaKnown RBP3.04□□□□□ -1.92
CCDC54-201ENST00000261058 CELA1Q9UNI1 258 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 TFR2Q9UP52 801 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 SLC7A11Q9UPY5 501 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 ARHGAP23Q9P227 1491 aa3.04□□□□□ -1.92
CCDC54-201ENST00000261058 THOC2Q8NI27 1593 aaKnown RBP3.03□□□□□ -1.92
CCDC54-201ENST00000261058 ZFYVE9O95405 1425 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 C9orf84Q5VXU9 1444 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 UHRF1BP1Q6BDS2 1440 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 CCDC160A6NGH7 325 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 H0Y980 276 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 CXCR6O00574 342 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 CLDN11O75508 207 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 UTS2O95399 124 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 TDP2O95551 362 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 HLA-AP01891 365 aaKnown RBP3.03□□□□□ -1.92
CCDC54-201ENST00000261058 HBE1P02100 147 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 METTL15P1P0C7V9 234 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 C8orf88P0DMB2 117 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 IFI30P13284 250 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 FGF9P31371 208 aaPredicted RBP3.03□□□□□ -1.92
CCDC54-201ENST00000261058 TTPAP49638 278 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 UBE2KP61086 200 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 IL5RAQ01344 420 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 TLE4Q04727 773 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 OXA1LQ15070 435 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 GABRA6Q16445 453 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 CDNFQ49AH0 187 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF658BQ4V348 819 aaPredicted RBP3.03□□□□□ -1.92
CCDC54-201ENST00000261058 ACTL10Q5JWF8 245 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 FBXW9Q5XUX1 488 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 DRAM2Q6UX65 266 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 FAM131AQ6UXB0 335 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF767PQ75MW2 155 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 LGI3Q8N145 548 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 ZNF283Q8N7M2 679 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 OR1M1Q8NGA1 313 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 OR4F15Q8NGB8 312 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 SYNPRQ8TBG9 265 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 FAM45AQ8TCE6 357 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 CD200R1Q8TD46 325 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 TCTEX1D2Q8WW35 142 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 DNAJC9Q8WXX5 260 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 MS4A14Q96JA4 679 aa3.03□□□□□ -1.92
CCDC54-201ENST00000261058 IMMP1LQ96LU5 166 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms